CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025851.1-P	Field mustard	nucleus	98.82	98.82
PGSC0003DMT400025891	Potato	cytosol	32.55	42.13
Solyc04g082740.2.1	Tomato	cytosol	32.16	41.62
CDX88280	Canola	plastid	21.18	39.13
CDX87597	Canola	plastid	20.78	38.41
CDX85951	Canola	extracellular	20.78	37.32
CDX68096	Canola	extracellular	20.39	36.62
CDY31505	Canola	cytosol	41.57	35.45
CDY17558	Canola	cytosol	23.92	31.77
CDY43486	Canola	nucleus	24.31	25.41
AT1G20870.1	Thale cress	cytosol	44.71	24.62
CDY01350	Canola	nucleus	43.14	23.91
CDY31860	Canola	nucleus	42.35	23.63
KRH44015	Soybean	nucleus	32.94	21.32
KRH10443	Soybean	nucleus	32.55	21.07
VIT_18s0122g00750.t01	Wine grape	nucleus	31.37	20.25
CDY43484	Canola	cytosol	22.75	17.68
CDY17557	Canola	cytosol	22.75	17.26

Protein Annotations

EnsemblPlants:CDY29497	EnsemblPlantsGene:GSBRNA2T00043183001	Gene3D:2.60.40.790	InterPro:HSP20-like_chaperone	InterPro:IPR008978	PANTHER:PTHR34661
PANTHER:PTHR34661:SF1	ProteinID:CDY29497	ProteinID:CDY29497.1	SEG:seg	UniParc:UPI0004EF27DB	UniProt:A0A078GWH7
MapMan:35.1	:	:	:	:	:

Description

BnaA06g14730DBnaA06g14730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWH7]

Coordinates

chrLK032238:+:280513..281873

Molecular Weight (calculated)

28035.4 Da

IEP (calculated)

7.854

GRAVY (calculated)

-0.520

Length

255 amino acids

Sequence
(BLAST)

001: MSPCKRKNEE DAVAADDAVC LISKSPEGIS LDIPQRKGKE QECSREETSS GLVYYQDCNS YAEPRETCKR KKDAGGIISK TPERSRETYK KRRVKDSSTN
101: KNGETLMEID KTDEPTSLSL VLVPPEMKEC DAEAAVITTG TASKGTLGSS IDIGVNKAAY FFQVALPGVC KASGEFSCEI ESDGKVILEG STTTGCNTIK
201: RHSRVFKMNI RKLCLPGPFK LSFRLPGPVD PRLFSPNFRS DGIFEAVVIR QENFI

Best Arabidopsis Sequence Match ( AT1G20870.1 )
(BLAST)

001: MSLYSDGLSS DQYFLVNFIM SNYLGPDVYS DNPRCSSSQR LARGLPPYTL MHIGSSSLTV SQLQNLYYNV LRNAKSSLLL HPDMIYMYLK GYLPLEPSGK
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS

Arabidopsis Description

IDM3Increased DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.