Factsheet for VIT_18s0122g00750.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025891	Potato	cytosol	24.3	48.73
Solyc04g082740.2.1	Tomato	cytosol	24.05	48.22
KRH10443	Soybean	nucleus	45.32	45.43
KRH44015	Soybean	nucleus	43.54	43.65
AT1G20870.1	Thale cress	cytosol	44.05	37.58
CDY31860	Canola	nucleus	41.52	35.89
VIT_18s0122g00770.t01	Wine grape	extracellular	14.43	34.97
CDY01350	Canola	nucleus	39.49	33.91
VIT_14s0128g00260.t01	Wine grape	cytosol	14.18	33.53
Bra012253.1-P	Field mustard	nucleus	38.99	33.48
CDY29497	Canola	nucleus	20.25	31.37
Bra025851.1-P	Field mustard	nucleus	20.0	30.98
VIT_14s0128g00280.t01	Wine grape	nucleus, plastid	18.73	29.72
VIT_14s0128g00270.t01	Wine grape	cytosol	15.95	25.1
CDY31505	Canola	cytosol	18.73	24.75

Protein Annotations

EntrezGene:100246169	wikigene:100246169	MapMan:12.5.3.2.3	Gene3D:2.60.40.790	ProteinID:CCB62676	ProteinID:CCB62676.1
UniProt:F6I6V8	EMBL:FN596759	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:1901537	InterPro:HSP20-like_chaperone	InterPro:IPR008978	EntrezGene:LOC100246169	wikigene:LOC100246169
PANTHER:PTHR34661	PANTHER:PTHR34661:SF1	UniParc:UPI00015CC55D	ArrayExpress:VIT_18s0122g00750	EnsemblPlantsGene:VIT_18s0122g00750	EnsemblPlants:VIT_18s0122g00750.t01
RefSeq:XP_002273277	RefSeq:XP_002273277.1	:	:	:	:

Description

No Description!

Coordinates

chr18:+:565468..567910

Molecular Weight (calculated)

44167.0 Da

IEP (calculated)

7.702

GRAVY (calculated)

-0.261

Length

395 amino acids

Sequence
(BLAST)

001: MDLQGVDFSP RPLSRASLSD LHFLANFIMS TYLGPDVKSD NPRRSASQRV AEGLPPYSLN DLGLSFLSVS QLESLYYFIL RHALPNLALS PYLFHMYLKG
101: DLPLLNSGLP EDRLQFTSFF PLHLHEQTSF LRGLDIVKGI ILISEPDTSY MKQDVLERFR YLSGMDSLKI DINESQRYQH RHWTGREEIE RNFLTISGGP
201: YAGNASNINS ISPSKVQDEF KRRRLLEPLE MPVVQHVPSF SHGSPRRCNL DGPSMMPLLS VSNAEECKSE ASIVLTGVAG EVSAGPPIGR VDIGVSKTAY
301: FFRVALPGVR KDNRHFGCEV ENDGKVQIHG STSAGGRTIV KHPRVFQMKL QQLCPPGPFT VSFRLPGPVD PRLFKANFRS DGIFEGIIVK SEDMD

Best Arabidopsis Sequence Match ( AT1G54840.1 )
(BLAST)

001: MSDTMPEIVS PLVAENSQEQ EESVLISLDI EEDKLFLLHF IIGTYFGPDL RKQHHRPKQS AFQIQALKNV VVDELSGSLM KRAELERVYY HIIRNVDPSL
101: VMKPKKLREY FNAKRNDSNR DYPLFVDLFP RKLHPETHVR HKFKFIRSIV FINDPDTSCM REECVARFKR LTGLDSFALS LSVDVTKSNG VVAANEVKVE
201: IDESVEPVKE DNAGTCTSGE ESDVAAKPEV KSEAHGGLMV GLMDIGECDD AYLFRVSLPG VKRDERYFSC EVEDNGKVLV RGVTTTGGKR VKRYSHVFEM
301: QTRSLCPPGN FSVSFRLPGP VHPHEFSGNF GTDGILEGVV MKNLQKQTV

Arabidopsis Description

IDM2Increased DNA methylation 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.