Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29497 | Canola | nucleus | 35.45 | 41.57 |
| CDX88280 | Canola | plastid | 18.06 | 39.13 |
| PGSC0003DMT400025891 | Potato | cytosol | 25.42 | 38.58 |
| CDX87597 | Canola | plastid | 17.73 | 38.41 |
| Solyc04g082740.2.1 | Tomato | cytosol | 24.75 | 37.56 |
| CDX85951 | Canola | extracellular | 17.39 | 36.62 |
| CDX68096 | Canola | extracellular | 17.06 | 35.92 |
| CDY17558 | Canola | cytosol | 19.73 | 30.73 |
| CDY43486 | Canola | nucleus | 19.73 | 24.18 |
| AT1G20870.1 | Thale cress | cytosol | 35.45 | 22.89 |
| CDY31860 | Canola | nucleus | 32.44 | 21.23 |
| CDY01350 | Canola | nucleus | 31.77 | 20.65 |
| VIT_18s0122g00750.t01 | Wine grape | nucleus | 24.75 | 18.73 |
| KRH10443 | Soybean | nucleus | 24.08 | 18.27 |
| KRH44015 | Soybean | nucleus | 24.08 | 18.27 |
| CDY43484 | Canola | cytosol | 18.06 | 16.46 |
| CDY17557 | Canola | cytosol | 17.39 | 15.48 |
Protein Annotations
| EnsemblPlants:CDY31505 | EnsemblPlantsGene:GSBRNA2T00047808001 | Gene3D:2.60.40.790 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 | PANTHER:PTHR34661 |
| PANTHER:PTHR34661:SF1 | ProteinID:CDY31505 | ProteinID:CDY31505.1 | SEG:seg | UniParc:UPI0004EE3C01 | UniProt:A0A078GYE6 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC05g16140DBnaC05g16140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYE6]
Coordinates
chrLK032273:-:383226..394448
Molecular Weight (calculated)
33433.8 Da
IEP (calculated)
9.126
GRAVY (calculated)
-0.569
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MKECDAEPVV TTTGTASKVT LGPSIGVVDI GVNKSAYFLQ VALPGVCKDS GEFSCEIESD GKVILEGSTT KGCKTIKRHS RVFKMNIRKL CPPGPFRLSF
101: SLPGPVDPRL FSPNFRSDGR AHDRRPTFER RELRDRSSTH SSRDYHLHGD RPQYSQSSRT PPPNPVREPM ELLVIPKHGE INSHSSERRS TLERIERPQQ
201: EPQRSGGLSS SLIARLQDVE VNYEQGDLRN KLNEGSSETH FSLIFSSITR TTTTKSKHLS LFLIYLLQLC LGLNRQIFQA STLHCLSISE NLNLEGGRC
101: SLPGPVDPRL FSPNFRSDGR AHDRRPTFER RELRDRSSTH SSRDYHLHGD RPQYSQSSRT PPPNPVREPM ELLVIPKHGE INSHSSERRS TLERIERPQQ
201: EPQRSGGLSS SLIARLQDVE VNYEQGDLRN KLNEGSSETH FSLIFSSITR TTTTKSKHLS LFLIYLLQLC LGLNRQIFQA STLHCLSISE NLNLEGGRC
001: MSLYSDGLSS DQYFLVNFIM SNYLGPDVYS DNPRCSSSQR LARGLPPYTL MHIGSSSLTV SQLQNLYYNV LRNAKSSLLL HPDMIYMYLK GYLPLEPSGK
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS
Arabidopsis Description
IDM3Increased DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYQ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.