CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021325.1-P	Field mustard	cytosol	97.92	97.92
CDY43486	Canola	nucleus	98.44	77.46
AT1G54850.1	Thale cress	cytosol	77.6	72.33
VIT_14s0128g00260.t01	Wine grape	cytosol	49.48	56.89
CDX87597	Canola	plastid	29.17	40.58
PGSC0003DMT400073582	Potato	cytosol	48.44	40.26
Solyc01g098810.2.1	Tomato	cytosol, nucleus	47.4	39.57
CDX88280	Canola	plastid	28.12	39.13
CDX85951	Canola	extracellular	28.12	38.03
CDX68096	Canola	extracellular	27.6	37.32
VIT_14s0128g00270.t01	Wine grape	cytosol	44.79	34.26
CDY29497	Canola	nucleus	31.77	23.92
CDY43484	Canola	cytosol	35.94	21.04
CDY31505	Canola	cytosol	30.73	19.73
CDY17557	Canola	cytosol	34.38	19.64
CDY31860	Canola	nucleus	31.77	13.35
CDY01350	Canola	nucleus	31.25	13.04

Protein Annotations

EnsemblPlants:CDY17558	EnsemblPlantsGene:GSBRNA2T00001734001	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	PANTHER:PTHR34661	PANTHER:PTHR34661:SF3	PFAM:PF00011	PFscan:PS01031	ProteinID:CDY17558
ProteinID:CDY17558.1	SUPFAM:SSF49764	UniParc:UPI0004EF02EA	UniProt:A0A078FZ24	MapMan:35.1	:

Description

BnaC01g26820DBnaC01g26820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZ24]

Coordinates

chrLK032075:+:543814..545132

Molecular Weight (calculated)

20508.2 Da

IEP (calculated)

4.497

GRAVY (calculated)

-0.251

Length

192 amino acids

Sequence
(BLAST)

001: MRESNGFPQV LEVAPLNSLP YVGPLNGNSS MSGNKANETS EKTGPPAMIF LPSESAPEFY SLISQSKTGV ALTGSAAMGK IGPTIGLVDI AESDDSYYFR
101: VSLPGVSRDE KEFSCEIEPD GKILIKGATT TGEKTVCKHN QVFKMLSQNL CPPGHFTISF QLPGPVSNED FSGNFGADGV LEGVVKKLYY ED

Best Arabidopsis Sequence Match ( AT1G54850.1 )
(BLAST)

001: MRSSSGLNGM RENNSFPDNT RNPQILEVTP LNSMPYIGPV THASMSSNRM NDSVEKVGGP AMIFLPSDSS SEFSNLISQT KTGVALTGSA AMGKIGLTIG
101: LVDIAESEDS YYFRVALPGV SRDEKEFSCE IEPDGKIMIK GATTTGEQTV CKHNQIFKML TQNLCPPGHF TINFQLPGPV SNEEFNGNFG SDGVLEGVVK
201: KVYYED

Arabidopsis Description

ACD22.3Alpha-crystallin domain-containing protein 22.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84K79]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.