Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17558 | Canola | cytosol | 97.92 | 97.92 |
| CDY43486 | Canola | nucleus | 99.48 | 78.28 |
| AT1G54850.1 | Thale cress | cytosol | 77.08 | 71.84 |
| VIT_14s0128g00260.t01 | Wine grape | cytosol | 50.52 | 58.08 |
| Bra015744.1-P | Field mustard | plastid | 29.17 | 40.58 |
| PGSC0003DMT400073582 | Potato | cytosol | 48.44 | 40.26 |
| Solyc01g098810.2.1 | Tomato | cytosol, nucleus | 47.4 | 39.57 |
| Bra003718.1-P | Field mustard | extracellular | 28.12 | 38.03 |
| VIT_14s0128g00270.t01 | Wine grape | cytosol | 44.27 | 33.86 |
| Bra025851.1-P | Field mustard | nucleus | 31.77 | 23.92 |
| Bra021326.1-P | Field mustard | cytosol | 34.9 | 19.94 |
| Bra012253.1-P | Field mustard | nucleus | 31.77 | 13.26 |
Protein Annotations
| EnsemblPlants:Bra021325.1 | EnsemblPlants:Bra021325.1-P | EnsemblPlantsGene:Bra021325 | Gene3D:2.60.40.790 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | PANTHER:PTHR34661 | PANTHER:PTHR34661:SF3 | PFAM:PF00011 | PFscan:PS01031 | SUPFAM:SSF49764 |
| UniParc:UPI0002545073 | UniProt:M4DXS9 | MapMan:35.1 | : | : | : |
Description
AT1G54850 (E=1e-086) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54840.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA01:+:26264107..26264764
Molecular Weight (calculated)
20507.2 Da
IEP (calculated)
4.497
GRAVY (calculated)
-0.222
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MRESTGFPQV IEVAPLNSLP YVGPLNGNSS MSGNKANETA EKTGPPAMIF LPSESAPEFY SLISQSKTGV ALTGSAAMGK IGPTIGLVDI AESDDSYYFR
101: VSLPGVSRDE KEFSCEIEPD GKILIKGATT TGEKTVCRHN QVFKMLSQNL CPPGHFTISF QLPGPVSNED FSGNFGADGV LEGVVKKLYY ED
101: VSLPGVSRDE KEFSCEIEPD GKILIKGATT TGEKTVCRHN QVFKMLSQNL CPPGHFTISF QLPGPVSNED FSGNFGADGV LEGVVKKLYY ED
001: MRSSSGLNGM RENNSFPDNT RNPQILEVTP LNSMPYIGPV THASMSSNRM NDSVEKVGGP AMIFLPSDSS SEFSNLISQT KTGVALTGSA AMGKIGLTIG
101: LVDIAESEDS YYFRVALPGV SRDEKEFSCE IEPDGKIMIK GATTTGEQTV CKHNQIFKML TQNLCPPGHF TINFQLPGPV SNEEFNGNFG SDGVLEGVVK
201: KVYYED
101: LVDIAESEDS YYFRVALPGV SRDEKEFSCE IEPDGKIMIK GATTTGEQTV CKHNQIFKML TQNLCPPGHF TINFQLPGPV SNEEFNGNFG SDGVLEGVVK
201: KVYYED
Arabidopsis Description
ACD22.3Alpha-crystallin domain-containing protein 22.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84K79]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.