Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87597 | Canola | plastid | 98.55 | 98.55 |
| CDX88280 | Canola | plastid | 95.65 | 95.65 |
| Bra003718.1-P | Field mustard | extracellular | 86.23 | 83.8 |
| AT1G76440.1 | Thale cress | cytosol | 82.61 | 79.72 |
| PGSC0003DMT400025889 | Potato | cytosol | 52.17 | 47.06 |
| Solyc04g082720.2.1 | Tomato | cytosol, nucleus | 51.45 | 46.41 |
| VIT_18s0122g00770.t01 | Wine grape | extracellular | 40.58 | 34.36 |
| Bra021325.1-P | Field mustard | cytosol | 40.58 | 29.17 |
| PGSC0003DMT400025890 | Potato | cytosol | 25.36 | 25.55 |
| Bra025851.1-P | Field mustard | nucleus | 38.41 | 20.78 |
| Bra021326.1-P | Field mustard | cytosol | 34.78 | 14.29 |
| Solyc04g082730.1.1 | Tomato | cytosol | 12.32 | 13.18 |
| Bra012253.1-P | Field mustard | nucleus | 39.13 | 11.74 |
Protein Annotations
| EnsemblPlants:Bra015744.1 | EnsemblPlants:Bra015744.1-P | EnsemblPlantsGene:Bra015744 | Gene3D:2.60.40.790 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 |
| PANTHER:PTHR34661 | PANTHER:PTHR34661:SF2 | SUPFAM:SSF49764 | UniParc:UPI00025420D2 | UniProt:M4DGW8 | MapMan:35.1 |
Description
AT1G76440 (E=5e-065) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA07:-:21063182..21063683
Molecular Weight (calculated)
15089.5 Da
IEP (calculated)
8.662
GRAVY (calculated)
0.043
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPEIHHSKV ISHVFFTGSA KQGSPGPPIG LVDIGESDIA YLFRVSLPGI HKNLNKIKCE IQREGRVCIQ GVVPEIAIPS DSGCLYRMQV QQLCPPGPFS
101: ITFNLPGQVD PRLFSPKFRP DGIFEVVVVK LGVRVPTS
101: ITFNLPGQVD PRLFSPKFRP DGIFEVVVVK LGVRVPTS
001: MNAENNQTTT THSKVISHVF CTGTAKLGSV GPPIGLVDIG VSEVAYIFRV SLPGIEKNQD KIKCEIQREG RVCIQGVIPE IAIPSDTGCL YRMQVQQLCP
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
Arabidopsis Description
AT1G76440 protein [Source:UniProtKB/TrEMBL;Acc:Q9S842]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.