Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85951 | Canola | extracellular | 87.41 | 88.03 |
| Bra003718.1-P | Field mustard | extracellular | 86.71 | 87.32 |
| CDX68096 | Canola | extracellular | 86.01 | 86.62 |
| Bra015744.1-P | Field mustard | plastid | 79.72 | 82.61 |
| CDX87597 | Canola | plastid | 78.32 | 81.16 |
| CDX88280 | Canola | plastid | 76.22 | 78.99 |
| PGSC0003DMT400025889 | Potato | cytosol | 50.35 | 47.06 |
| Solyc04g082720.2.1 | Tomato | cytosol, nucleus | 49.65 | 46.41 |
| VIT_18s0122g00770.t01 | Wine grape | extracellular | 39.16 | 34.36 |
| AT1G54850.1 | Thale cress | cytosol | 36.36 | 25.24 |
| PGSC0003DMT400025890 | Potato | cytosol | 23.08 | 24.09 |
| AT1G54840.1 | Thale cress | cytosol | 35.66 | 14.61 |
| AT1G20870.1 | Thale cress | cytosol | 40.56 | 12.53 |
| Solyc04g082730.1.1 | Tomato | cytosol | 11.19 | 12.4 |
Protein Annotations
| Gene3D:2.60.40.790 | MapMan:35.1 | EntrezGene:843977 | UniProt:A0A178W5Q2 | ProteinID:AAF16657.1 | ProteinID:AAG51943.1 |
| ProteinID:AEE35841.1 | ProteinID:AEE35842.1 | ProteinID:AEE35843.1 | EMBL:AK317538 | ArrayExpress:AT1G76440 | EnsemblPlantsGene:AT1G76440 |
| RefSeq:AT1G76440 | TAIR:AT1G76440 | RefSeq:AT1G76440-TAIR-G | EnsemblPlants:AT1G76440.1 | TAIR:AT1G76440.1 | EMBL:AY128378 |
| Unigene:At.34653 | EMBL:BT000371 | GO:GO:0005575 | GO:GO:0008150 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 |
| RefSeq:NP_001031287.1 | RefSeq:NP_177770.1 | RefSeq:NP_974155.1 | ProteinID:OAP12442.1 | PO:PO:0000293 | PANTHER:PTHR34661 |
| PANTHER:PTHR34661:SF2 | UniProt:Q9S842 | SUPFAM:SSF49764 | UniParc:UPI00000ABF0A | : | : |
Description
AT1G76440 protein [Source:UniProtKB/TrEMBL;Acc:Q9S842]
Coordinates
chr1:-:28682084..28683785
Molecular Weight (calculated)
15526.9 Da
IEP (calculated)
7.852
GRAVY (calculated)
0.071
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MNAENNQTTT THSKVISHVF CTGTAKLGSV GPPIGLVDIG VSEVAYIFRV SLPGIEKNQD KIKCEIQREG RVCIQGVIPE IAIPSDTGCL YRMQVQQLCP
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.