Factsheet for PGSC0003DMT400025889

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082720.2.1	Tomato	cytosol, nucleus	96.73	96.73
Bra015744.1-P	Field mustard	plastid	47.06	52.17
CDX87597	Canola	plastid	47.06	52.17
Bra003718.1-P	Field mustard	extracellular	47.71	51.41
CDX85951	Canola	extracellular	47.71	51.41
CDX88280	Canola	plastid	45.75	50.72
CDX68096	Canola	extracellular	47.06	50.7
AT1G76440.1	Thale cress	cytosol	47.06	50.35
VIT_18s0122g00770.t01	Wine grape	extracellular	34.64	32.52
PGSC0003DMT400025891	Potato	cytosol	38.56	29.95
PGSC0003DMT400025890	Potato	cytosol	22.88	25.55
PGSC0003DMT400073582	Potato	cytosol	30.07	19.91
PGSC0003DMT400073580	Potato	cytosol, nucleus, plasma membrane	36.6	11.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400025889	EnsemblPlantsGene:PGSC0003DMG400009996	EntrezGene:102581493	Gene3D:2.60.40.790	InterPro:HSP20-like_chaperone	InterPro:IPR008978
PANTHER:PTHR34661	PANTHER:PTHR34661:SF2	PGSC:PGSC0003DMG400009996	RefSeq:XP_006342171.1	RefSeq:XP_015161926.1	SUPFAM:SSF49764
UniParc:UPI000296C0EA	UniProt:M1AMA0	MapMan:35.1	:	:	:

Description

Small heat shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009996]

Coordinates

chr4:-:71887737..71891840

Molecular Weight (calculated)

16716.2 Da

IEP (calculated)

8.054

GRAVY (calculated)

-0.239

Length

153 amino acids

Sequence
(BLAST)

001: MNPNESAKSH AKPDIILTGT AKTCPNGPPL GLVDIGSSEN AYLFRVALPG VRHKCNIKFD IQREGRVRIE GVITESEALK NSLKGYEMKV QQLPSPGPFT
101: ISFNLPGPVD PRLCSPQFRT DGILEVIVMK FQIPLVSAEG LPENWYNGSF PAP

Best Arabidopsis Sequence Match ( AT1G76440.1 )
(BLAST)

001: MNAENNQTTT THSKVISHVF CTGTAKLGSV GPPIGLVDIG VSEVAYIFRV SLPGIEKNQD KIKCEIQREG RVCIQGVIPE IAIPSDTGCL YRMQVQQLCP
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS

Arabidopsis Description

AT1G76440 protein [Source:UniProtKB/TrEMBL;Acc:Q9S842]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.