Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015744.1-P | Field mustard | plastid | 95.65 | 95.65 |
| CDX87597 | Canola | plastid | 95.65 | 95.65 |
| CDX85951 | Canola | extracellular | 84.06 | 81.69 |
| CDX68096 | Canola | extracellular | 82.61 | 80.28 |
| AT1G76440.1 | Thale cress | cytosol | 78.99 | 76.22 |
| Solyc04g082720.2.1 | Tomato | cytosol, nucleus | 50.72 | 45.75 |
| PGSC0003DMT400025889 | Potato | cytosol | 50.72 | 45.75 |
| VIT_18s0122g00770.t01 | Wine grape | extracellular | 39.86 | 33.74 |
| CDY17558 | Canola | cytosol | 39.13 | 28.12 |
| PGSC0003DMT400025890 | Potato | cytosol | 24.64 | 24.82 |
| CDY43486 | Canola | nucleus | 39.13 | 22.13 |
| CDY29497 | Canola | nucleus | 39.13 | 21.18 |
| CDY31505 | Canola | cytosol | 39.13 | 18.06 |
| CDY17557 | Canola | cytosol | 34.06 | 13.99 |
| Solyc04g082730.1.1 | Tomato | cytosol | 13.04 | 13.95 |
| CDY43484 | Canola | cytosol | 32.61 | 13.72 |
| CDY31860 | Canola | nucleus | 38.41 | 11.6 |
| CDY01350 | Canola | nucleus | 36.96 | 11.09 |
Protein Annotations
| EnsemblPlants:CDX88280 | EnsemblPlantsGene:GSBRNA2T00147776001 | Gene3D:2.60.40.790 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 | PANTHER:PTHR34661 |
| PANTHER:PTHR34661:SF2 | ProteinID:CDX88280 | ProteinID:CDX88280.1 | SUPFAM:SSF49764 | UniParc:UPI0004EE143F | MapMan:35.1 |
Description
BnaC06g37240D
Coordinates
chrLK031855:-:138445..139516
Molecular Weight (calculated)
15038.4 Da
IEP (calculated)
8.662
GRAVY (calculated)
0.057
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPEIHHSKV ISHVFFTGSA KQGTPGPPIG LADIGESDIA YFFRVSLPGI HKNLNKIKCD IQREGRVCIQ GVVPEIAIPS DSGCLYRMQV QQLCPPGPFS
101: ITFSLPGQVD PRLFSPKFRP DGIFEVVVVK LGVRVPAS
101: ITFSLPGQVD PRLFSPKFRP DGIFEVVVVK LGVRVPAS
001: MNAENNQTTT THSKVISHVF CTGTAKLGSV GPPIGLVDIG VSEVAYIFRV SLPGIEKNQD KIKCEIQREG RVCIQGVIPE IAIPSDTGCL YRMQVQQLCP
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
Arabidopsis Description
AT1G76440 protein [Source:UniProtKB/TrEMBL;Acc:Q9S842]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.