Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra021326.1-P | Field mustard | cytosol | 90.77 | 90.77 |
CDY43484 | Canola | cytosol | 87.8 | 89.94 |
AT1G54840.1 | Thale cress | cytosol | 60.71 | 58.45 |
CDX87597 | Canola | plastid | 14.58 | 35.51 |
CDY17558 | Canola | cytosol | 19.64 | 34.38 |
CDX88280 | Canola | plastid | 13.99 | 34.06 |
CDX85951 | Canola | extracellular | 14.29 | 33.8 |
CDX68096 | Canola | extracellular | 13.99 | 33.1 |
CDY43486 | Canola | nucleus | 20.24 | 27.87 |
CDY29497 | Canola | nucleus | 17.26 | 22.75 |
CDY01350 | Canola | nucleus | 29.46 | 21.52 |
CDY31860 | Canola | nucleus | 28.87 | 21.23 |
CDY31505 | Canola | cytosol | 15.48 | 17.39 |
Protein Annotations
EnsemblPlants:CDY17557 | EnsemblPlantsGene:GSBRNA2T00001733001 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
InterPro:IPR008978 | PANTHER:PTHR34661 | PANTHER:PTHR34661:SF3 | PFscan:PS01031 | ProteinID:CDY17557 | ProteinID:CDY17557.1 |
UniParc:UPI0004EC13FB | UniProt:A0A078FXU8 | MapMan:12.5.3.2.3 | : | : | : |
Description
BnaC01g26810DBnaC01g26810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXU8]
Coordinates
chrLK032075:-:527003..528427
Molecular Weight (calculated)
38039.2 Da
IEP (calculated)
5.824
GRAVY (calculated)
-0.444
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGTGREPVF AEKSEQEKVL ISLDTEDDKL FLLHFIIGNY FGPHLHDDDG NKRKQSAFQI QASSNLPTKE ELSASLMKRA ELERVYYYVL RNADPSLVFN
101: RKVLSRYFNE KRKASNVDFP LFRDLYPFKL HPESRIRNQY KLIKSIVFIN DPDTSCMRED CVDRFKLLTG LQSFTLSLNI DVTEVDDEPL ETLGTCLEGG
201: PGNHDESEPT LEANGVIIAD AQAAQMMGLM DIGECADAYL FRVSLPGVKR DERHFSCEVE DNGRVLVRGV TTTGEKQVHR YSQVFKMKTH NLCPPGQFSV
301: SFHLPGPVHP QEFTGSFGTD GIFEGTVMKK LQKQTV
101: RKVLSRYFNE KRKASNVDFP LFRDLYPFKL HPESRIRNQY KLIKSIVFIN DPDTSCMRED CVDRFKLLTG LQSFTLSLNI DVTEVDDEPL ETLGTCLEGG
201: PGNHDESEPT LEANGVIIAD AQAAQMMGLM DIGECADAYL FRVSLPGVKR DERHFSCEVE DNGRVLVRGV TTTGEKQVHR YSQVFKMKTH NLCPPGQFSV
301: SFHLPGPVHP QEFTGSFGTD GIFEGTVMKK LQKQTV
001: MSDTMPEIVS PLVAENSQEQ EESVLISLDI EEDKLFLLHF IIGTYFGPDL RKQHHRPKQS AFQIQALKNV VVDELSGSLM KRAELERVYY HIIRNVDPSL
101: VMKPKKLREY FNAKRNDSNR DYPLFVDLFP RKLHPETHVR HKFKFIRSIV FINDPDTSCM REECVARFKR LTGLDSFALS LSVDVTKSNG VVAANEVKVE
201: IDESVEPVKE DNAGTCTSGE ESDVAAKPEV KSEAHGGLMV GLMDIGECDD AYLFRVSLPG VKRDERYFSC EVEDNGKVLV RGVTTTGGKR VKRYSHVFEM
301: QTRSLCPPGN FSVSFRLPGP VHPHEFSGNF GTDGILEGVV MKNLQKQTV
101: VMKPKKLREY FNAKRNDSNR DYPLFVDLFP RKLHPETHVR HKFKFIRSIV FINDPDTSCM REECVARFKR LTGLDSFALS LSVDVTKSNG VVAANEVKVE
201: IDESVEPVKE DNAGTCTSGE ESDVAAKPEV KSEAHGGLMV GLMDIGECDD AYLFRVSLPG VKRDERYFSC EVEDNGKVLV RGVTTTGGKR VKRYSHVFEM
301: QTRSLCPPGN FSVSFRLPGP VHPHEFSGNF GTDGILEGVV MKNLQKQTV
Arabidopsis Description
IDM2Increased DNA methylation 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWL4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.