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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra021326.1-P Field mustard cytosol 90.77 90.77
CDY43484 Canola cytosol 87.8 89.94
AT1G54840.1 Thale cress cytosol 60.71 58.45
CDX87597 Canola plastid 14.58 35.51
CDY17558 Canola cytosol 19.64 34.38
CDX88280 Canola plastid 13.99 34.06
CDX85951 Canola extracellular 14.29 33.8
CDX68096 Canola extracellular 13.99 33.1
CDY43486 Canola nucleus 20.24 27.87
CDY29497 Canola nucleus 17.26 22.75
CDY01350 Canola nucleus 29.46 21.52
CDY31860 Canola nucleus 28.87 21.23
CDY31505 Canola cytosol 15.48 17.39
Protein Annotations
EnsemblPlants:CDY17557EnsemblPlantsGene:GSBRNA2T00001733001Gene3D:2.60.40.790InterPro:A-crystallin/Hsp20_domInterPro:HSP20-like_chaperoneInterPro:IPR002068
InterPro:IPR008978PANTHER:PTHR34661PANTHER:PTHR34661:SF3PFscan:PS01031ProteinID:CDY17557ProteinID:CDY17557.1
UniParc:UPI0004EC13FBUniProt:A0A078FXU8MapMan:12.5.3.2.3:::
Description
BnaC01g26810DBnaC01g26810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXU8]
Coordinates
chrLK032075:-:527003..528427
Molecular Weight (calculated)
38039.2 Da
IEP (calculated)
5.824
GRAVY (calculated)
-0.444
Length
336 amino acids
Sequence
(BLAST)
001: MSGTGREPVF AEKSEQEKVL ISLDTEDDKL FLLHFIIGNY FGPHLHDDDG NKRKQSAFQI QASSNLPTKE ELSASLMKRA ELERVYYYVL RNADPSLVFN
101: RKVLSRYFNE KRKASNVDFP LFRDLYPFKL HPESRIRNQY KLIKSIVFIN DPDTSCMRED CVDRFKLLTG LQSFTLSLNI DVTEVDDEPL ETLGTCLEGG
201: PGNHDESEPT LEANGVIIAD AQAAQMMGLM DIGECADAYL FRVSLPGVKR DERHFSCEVE DNGRVLVRGV TTTGEKQVHR YSQVFKMKTH NLCPPGQFSV
301: SFHLPGPVHP QEFTGSFGTD GIFEGTVMKK LQKQTV
Best Arabidopsis Sequence Match ( AT1G54840.1 )
(BLAST)
001: MSDTMPEIVS PLVAENSQEQ EESVLISLDI EEDKLFLLHF IIGTYFGPDL RKQHHRPKQS AFQIQALKNV VVDELSGSLM KRAELERVYY HIIRNVDPSL
101: VMKPKKLREY FNAKRNDSNR DYPLFVDLFP RKLHPETHVR HKFKFIRSIV FINDPDTSCM REECVARFKR LTGLDSFALS LSVDVTKSNG VVAANEVKVE
201: IDESVEPVKE DNAGTCTSGE ESDVAAKPEV KSEAHGGLMV GLMDIGECDD AYLFRVSLPG VKRDERYFSC EVEDNGKVLV RGVTTTGGKR VKRYSHVFEM
301: QTRSLCPPGN FSVSFRLPGP VHPHEFSGNF GTDGILEGVV MKNLQKQTV
Arabidopsis Description
IDM2Increased DNA methylation 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWL4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.