Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43484 | Canola | cytosol | 59.03 | 62.8 |
| Bra021326.1-P | Field mustard | cytosol | 58.74 | 61.01 |
| CDY17557 | Canola | cytosol | 58.45 | 60.71 |
| AT1G76440.1 | Thale cress | cytosol | 14.61 | 35.66 |
| AT1G54850.1 | Thale cress | cytosol | 19.48 | 33.01 |
| AT1G20870.1 | Thale cress | cytosol | 30.95 | 23.33 |
Protein Annotations
| MapMan:12.5.3.2.3 | Gene3D:2.60.40.790 | EntrezGene:841923 | InterPro:A-crystallin/Hsp20_dom | UniProt:A0A178W270 | ProteinID:AAC64893.1 |
| ProteinID:AAG51105.1 | ProteinID:AEE33154.1 | ProteinID:AEE33155.1 | ArrayExpress:AT1G54840 | EnsemblPlantsGene:AT1G54840 | RefSeq:AT1G54840 |
| TAIR:AT1G54840 | RefSeq:AT1G54840-TAIR-G | EnsemblPlants:AT1G54840.1 | TAIR:AT1G54840.1 | EMBL:AY093020 | EMBL:AY128943 |
| Unigene:At.48309 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0019538 | GO:GO:0043971 | GO:GO:0080111 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | RefSeq:NP_175881.2 | RefSeq:NP_974031.1 | ProteinID:OAP12236.1 | PO:PO:0000037 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PFscan:PS01031 | PANTHER:PTHR34661 | PANTHER:PTHR34661:SF3 | UniProt:Q8RWL4 |
| SUPFAM:SSF49764 | UniParc:UPI00000A291C | : | : | : | : |
Description
IDM2Increased DNA methylation 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWL4]
Coordinates
chr1:-:20452593..20454266
Molecular Weight (calculated)
39397.1 Da
IEP (calculated)
6.443
GRAVY (calculated)
-0.374
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDTMPEIVS PLVAENSQEQ EESVLISLDI EEDKLFLLHF IIGTYFGPDL RKQHHRPKQS AFQIQALKNV VVDELSGSLM KRAELERVYY HIIRNVDPSL
101: VMKPKKLREY FNAKRNDSNR DYPLFVDLFP RKLHPETHVR HKFKFIRSIV FINDPDTSCM REECVARFKR LTGLDSFALS LSVDVTKSNG VVAANEVKVE
201: IDESVEPVKE DNAGTCTSGE ESDVAAKPEV KSEAHGGLMV GLMDIGECDD AYLFRVSLPG VKRDERYFSC EVEDNGKVLV RGVTTTGGKR VKRYSHVFEM
301: QTRSLCPPGN FSVSFRLPGP VHPHEFSGNF GTDGILEGVV MKNLQKQTV
101: VMKPKKLREY FNAKRNDSNR DYPLFVDLFP RKLHPETHVR HKFKFIRSIV FINDPDTSCM REECVARFKR LTGLDSFALS LSVDVTKSNG VVAANEVKVE
201: IDESVEPVKE DNAGTCTSGE ESDVAAKPEV KSEAHGGLMV GLMDIGECDD AYLFRVSLPG VKRDERYFSC EVEDNGKVLV RGVTTTGGKR VKRYSHVFEM
301: QTRSLCPPGN FSVSFRLPGP VHPHEFSGNF GTDGILEGVV MKNLQKQTV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.