CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01350	Canola	nucleus	76.59	76.09
AT1G20870.1	Thale cress	cytosol	63.68	62.85
PGSC0003DMT400025891	Potato	cytosol	18.38	42.64
CDY29497	Canola	nucleus	23.63	42.35
VIT_18s0122g00750.t01	Wine grape	nucleus	35.89	41.52
Solyc04g082740.2.1	Tomato	cytosol	17.07	39.59
KRH44015	Soybean	nucleus	33.92	39.34
CDX87597	Canola	plastid	11.82	39.13
CDX88280	Canola	plastid	11.6	38.41
CDX85951	Canola	extracellular	11.82	38.03
KRH10443	Soybean	nucleus	32.6	37.82
CDX68096	Canola	extracellular	11.6	37.32
CDY31505	Canola	cytosol	21.23	32.44
CDY17558	Canola	cytosol	13.35	31.77
CDY43484	Canola	cytosol	21.88	30.49
CDY17557	Canola	cytosol	21.23	28.87
CDY43486	Canola	nucleus	14.66	27.46

Protein Annotations

EnsemblPlants:CDY31860	EnsemblPlantsGene:GSBRNA2T00050584001	Gene3D:2.60.40.790	InterPro:HSP20-like_chaperone	InterPro:IPR008978	PANTHER:PTHR34661
PANTHER:PTHR34661:SF1	ProteinID:CDY31860	ProteinID:CDY31860.1	UniParc:UPI0004EDBF94	UniProt:A0A078GZG3	MapMan:12.5.3.2.3

Description

BnaC07g15100DBnaC07g15100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZG3]

Coordinates

chrLK032281:+:127459..128903

Molecular Weight (calculated)

50827.7 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.472

Length

457 amino acids

Sequence
(BLAST)

001: MSLCSDGLSS DPYFLVNFIM SHYLGPDVFS DIPRCSVSQR LSKRLPPYTP KQIGSSSLTV AQLQNLYYYV LRNASSSLLL HPDMVLMYLK GYLPMEPSGE
101: LRQFTHYFPT SLHPQKRYSP SLEIVKGIVV IDDPVVAFIS KDELQRFRCL SRVDDLKIDR VVSLSPRPVK MLDESRGAEQ DCLSNGEVTS NGLVSDQELQ
201: DTSKRKRVEK EVAVCVNSDQ IPEGISGDII PQRKGTEQEE AMSNGLVTNQ DCNSSAQPPQ TCKRKKDEEE AVSAHASCGV ISKTPERFRE TYKRRRFKNS
301: STKEKNKNGE SLVERDKTDP PLVIVPPAMK ECDAEPTVVT KGTASRGTSI GVVDIGVNKV AYFFQVALPG VSKDNDKFSC EIKSDGKVIL EGSTTTGQKT
401: IERHSRVFKM NSQKPCPPGP FKLSFSLPGP VDPRFVSPNF RSDGIFEAVV IRQKDTI

Best Arabidopsis Sequence Match ( AT1G20870.1 )
(BLAST)

001: MSLYSDGLSS DQYFLVNFIM SNYLGPDVYS DNPRCSSSQR LARGLPPYTL MHIGSSSLTV SQLQNLYYNV LRNAKSSLLL HPDMIYMYLK GYLPLEPSGK
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS

Arabidopsis Description

IDM3Increased DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.