CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10443	Soybean	nucleus	85.28	85.28
PGSC0003DMT400025891	Potato	cytosol	23.6	47.21
Solyc04g082740.2.1	Tomato	cytosol	22.59	45.18
VIT_18s0122g00750.t01	Wine grape	nucleus	43.65	43.54
AT1G20870.1	Thale cress	cytosol	40.86	34.77
CDY31860	Canola	nucleus	39.34	33.92
CDY29497	Canola	nucleus	21.32	32.94
Bra025851.1-P	Field mustard	nucleus	21.07	32.55
Bra012253.1-P	Field mustard	nucleus	37.31	31.96
CDY01350	Canola	nucleus	37.31	31.96
KRH33964	Soybean	cytosol	31.47	31.0
KRG92829	Soybean	nucleus	31.98	26.92
CDY31505	Canola	cytosol	18.27	24.08

Protein Annotations

EMBL:ACUP02004907	EnsemblPlants:KRH44015	EnsemblPlantsGene:GLYMA_08G185200	EntrezGene:100804780	Gene3D:2.60.40.790	InterPro:HSP20-like_chaperone
InterPro:IPR008978	PANTHER:PTHR34661	PANTHER:PTHR34661:SF1	ProteinID:KRH44015	ProteinID:KRH44015.1	UniParc:UPI000233885B
UniProt:I1KUK5	MapMan:12.5.3.2.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:14851224..14853024

Molecular Weight (calculated)

44118.4 Da

IEP (calculated)

9.427

GRAVY (calculated)

-0.283

Length

394 amino acids

Sequence
(BLAST)

001: MDLRGNLNYK RSSLTVKPVS SDRKFLIDFI VTTYLGPDVK SHNPRCSVIR RLIAGSPPYI SSDLGPSYVS VSFLERLYYY LLRDASPDLV LDINMFHMYL
101: KGKLVLPTSD FITQEYSQQF TSFFPLDLHQ QIWYPDSFRV VKGVVLVDDP STSCIKEEDL NRFRSLTGVR TFKLNLSECQ CFQLDCRSSK EGGDNCMNKM
201: PETFPNGGCQ SEKLQQERKR KYIDGTPLKP KFPNVLPTKH NAKVEPSKKK CKSDGPTFMP LISIPDIGDC NGDSSLILKG TARRGPFGPS VGVVDIGISK
301: VAYLFRVSLP GVKKDFTGQF SCDIESDGRV QIRGVLTGGS TITKQSRVFQ MKIRQLCSPG PFTLSFSLPG PVDPRLFAPN FRPDGIFEGV VIKQ

Best Arabidopsis Sequence Match ( AT1G20870.1 )
(BLAST)

001: MSLYSDGLSS DQYFLVNFIM SNYLGPDVYS DNPRCSSSQR LARGLPPYTL MHIGSSSLTV SQLQNLYYNV LRNAKSSLLL HPDMIYMYLK GYLPLEPSGK
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS

Arabidopsis Description

IDM3Increased DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.