Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29497 | Canola | nucleus | 98.82 | 98.82 |
| PGSC0003DMT400025891 | Potato | cytosol | 32.16 | 41.62 |
| Solyc04g082740.2.1 | Tomato | cytosol | 31.76 | 41.12 |
| Bra015744.1-P | Field mustard | plastid | 20.78 | 38.41 |
| Bra003718.1-P | Field mustard | extracellular | 20.78 | 37.32 |
| Bra021325.1-P | Field mustard | cytosol | 23.92 | 31.77 |
| AT1G20870.1 | Thale cress | cytosol | 43.92 | 24.19 |
| Bra012253.1-P | Field mustard | nucleus | 42.35 | 23.48 |
| KRH44015 | Soybean | nucleus | 32.55 | 21.07 |
| KRH10443 | Soybean | nucleus | 32.16 | 20.81 |
| VIT_18s0122g00750.t01 | Wine grape | nucleus | 30.98 | 20.0 |
| Bra021326.1-P | Field mustard | cytosol | 22.35 | 16.96 |
Protein Annotations
| EnsemblPlants:Bra025851.1 | EnsemblPlants:Bra025851.1-P | EnsemblPlantsGene:Bra025851 | Gene3D:2.60.40.790 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 |
| PANTHER:PTHR34661 | PANTHER:PTHR34661:SF1 | SEG:seg | UniParc:UPI000253EFDE | UniProt:M4EAP2 | MapMan:35.1 |
Description
AT1G20870 (E=1e-079) | LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54850.1); Has 48 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Coordinates
chrA06:-:8432709..8433620
Molecular Weight (calculated)
28019.4 Da
IEP (calculated)
7.854
GRAVY (calculated)
-0.511
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPCKRKNEE EAVAADDAVC LISKAPEGIS LDIPQRKGKE QECSREETSS GLVYYQDCNS YAEPRETCKR KKDAGGIISK TPERSRETYK KRRVKDSSTN
101: KNGETLMEID KTDEPTSLSL VLVPPEMKEC DAEAAVITTG TASKGTLGSS IDIGVNKAAY FFQVALPGVC KASGEFSCEI ESDGKVILEG SSTTGCNTIK
201: RHSRVFKMNI RKLCLPGPFK LSFRLPGPVD PRLFSPNFRS DGIFEAVVIR QENFI
101: KNGETLMEID KTDEPTSLSL VLVPPEMKEC DAEAAVITTG TASKGTLGSS IDIGVNKAAY FFQVALPGVC KASGEFSCEI ESDGKVILEG SSTTGCNTIK
201: RHSRVFKMNI RKLCLPGPFK LSFRLPGPVD PRLFSPNFRS DGIFEAVVIR QENFI
001: MSLYSDGLSS DQYFLVNFIM SNYLGPDVYS DNPRCSSSQR LARGLPPYTL MHIGSSSLTV SQLQNLYYNV LRNAKSSLLL HPDMIYMYLK GYLPLEPSGK
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS
Arabidopsis Description
IDM3Increased DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYQ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.