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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • plastid 2
  • mitochondrion 1
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68096 Canola extracellular 99.3 99.3
AT1G76440.1 Thale cress cytosol 87.32 86.71
Bra015744.1-P Field mustard plastid 83.8 86.23
Solyc04g082720.2.1 Tomato cytosol, nucleus 52.11 48.37
PGSC0003DMT400025889 Potato cytosol 51.41 47.71
VIT_18s0122g00770.t01 Wine grape extracellular 38.03 33.13
Bra021325.1-P Field mustard cytosol 38.03 28.12
PGSC0003DMT400025890 Potato cytosol 25.35 26.28
Bra025851.1-P Field mustard nucleus 37.32 20.78
Solyc04g082730.1.1 Tomato cytosol 12.68 13.95
Bra021326.1-P Field mustard cytosol 32.39 13.69
Bra012253.1-P Field mustard nucleus 38.03 11.74
Protein Annotations
EnsemblPlants:Bra003718.1EnsemblPlants:Bra003718.1-PEnsemblPlantsGene:Bra003718Gene3D:2.60.40.790InterPro:HSP20-like_chaperoneInterPro:IPR008978
PANTHER:PTHR34661PANTHER:PTHR34661:SF2UniParc:UPI000254155AUniProt:M4CHN5MapMan:35.1:
Description
AT1G76440 (E=1e-067) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20870.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA07:+:14681879..14682441
Molecular Weight (calculated)
15435.9 Da
IEP (calculated)
8.649
GRAVY (calculated)
0.064
Length
142 amino acids
Sequence
(BLAST)
001: MNPENHPTTT HSKVISHVFF TGTAKQGCAG PPLGLVDIGV SDIAYIFRVS LPGIAKYQDK IKCEIQREGR VCIQGVVPEI AIPSDSGCLY RMQVQQLSPP
101: GPFSITFNLP GQVDPRLFSP KFRADGIFEV VVVKLGVRIP TS
Best Arabidopsis Sequence Match ( AT1G76440.1 )
(BLAST)
001: MNAENNQTTT THSKVISHVF CTGTAKLGSV GPPIGLVDIG VSEVAYIFRV SLPGIEKNQD KIKCEIQREG RVCIQGVIPE IAIPSDTGCL YRMQVQQLCP
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
Arabidopsis Description
AT1G76440 protein [Source:UniProtKB/TrEMBL;Acc:Q9S842]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.