Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015744.1-P | Field mustard | plastid | 34.36 | 40.58 |
| CDX87597 | Canola | plastid | 34.36 | 40.58 |
| CDX88280 | Canola | plastid | 33.74 | 39.86 |
| AT1G76440.1 | Thale cress | cytosol | 34.36 | 39.16 |
| Bra003718.1-P | Field mustard | extracellular | 33.13 | 38.03 |
| CDX85951 | Canola | extracellular | 33.13 | 38.03 |
| CDX68096 | Canola | extracellular | 32.52 | 37.32 |
| PGSC0003DMT400025889 | Potato | cytosol | 32.52 | 34.64 |
| Solyc04g082720.2.1 | Tomato | cytosol, nucleus | 31.9 | 33.99 |
| VIT_14s0128g00260.t01 | Wine grape | cytosol | 31.9 | 31.14 |
| PGSC0003DMT400025890 | Potato | cytosol | 19.02 | 22.63 |
| VIT_14s0128g00280.t01 | Wine grape | nucleus, plastid | 31.9 | 20.88 |
| VIT_14s0128g00270.t01 | Wine grape | cytosol | 30.06 | 19.52 |
| VIT_18s0122g00750.t01 | Wine grape | nucleus | 34.97 | 14.43 |
| Solyc04g082730.1.1 | Tomato | cytosol | 11.04 | 13.95 |
Protein Annotations
| EntrezGene:100246177 | wikigene:100246177 | Gene3D:2.60.40.790 | MapMan:35.1 | InterPro:A-crystallin/Hsp20_dom | ProteinID:CCB62675 |
| ProteinID:CCB62675.1 | UniProt:F6I6V7 | EMBL:FN596759 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 |
| EntrezGene:LOC100246177 | wikigene:LOC100246177 | PFscan:PS01031 | PANTHER:PTHR34661 | PANTHER:PTHR34661:SF2 | SUPFAM:SSF49764 |
| SignalP:SignalP-noTM | UniParc:UPI000210ABA6 | ArrayExpress:VIT_18s0122g00770 | EnsemblPlantsGene:VIT_18s0122g00770 | EnsemblPlants:VIT_18s0122g00770.t01 | RefSeq:XP_002275119 |
| RefSeq:XP_002275119.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr18:+:572715..577406
Molecular Weight (calculated)
18094.8 Da
IEP (calculated)
8.420
GRAVY (calculated)
-0.261
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFAIYFSAF LNMWWILTME EHRSPSHTNP AVNASGSAKE RSSGPAFGGV DIGESEGGYF LRVAMPGAMR DEGSFSISKD GTVDIQGMIR YEIPSQVPKM
101: KVQQLYPPGP FALSLKLPGR VDPRMFTCKL RYDGIFEVVV MKPGYSDTPA QPSYRERSMP VNT
101: KVQQLYPPGP FALSLKLPGR VDPRMFTCKL RYDGIFEVVV MKPGYSDTPA QPSYRERSMP VNT
001: MNAENNQTTT THSKVISHVF CTGTAKLGSV GPPIGLVDIG VSEVAYIFRV SLPGIEKNQD KIKCEIQREG RVCIQGVIPE IAIPSDTGCL YRMQVQQLCP
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
Arabidopsis Description
AT1G76440 protein [Source:UniProtKB/TrEMBL;Acc:Q9S842]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.