Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400025889 | Potato | cytosol | 96.73 | 96.73 |
| Bra003718.1-P | Field mustard | extracellular | 48.37 | 52.11 |
| CDX85951 | Canola | extracellular | 48.37 | 52.11 |
| Bra015744.1-P | Field mustard | plastid | 46.41 | 51.45 |
| CDX87597 | Canola | plastid | 46.41 | 51.45 |
| CDX68096 | Canola | extracellular | 47.71 | 51.41 |
| CDX88280 | Canola | plastid | 45.75 | 50.72 |
| AT1G76440.1 | Thale cress | cytosol | 46.41 | 49.65 |
| VIT_18s0122g00770.t01 | Wine grape | extracellular | 33.99 | 31.9 |
| Solyc04g082740.2.1 | Tomato | cytosol | 39.87 | 30.96 |
| Solyc01g098810.2.1 | Tomato | cytosol, nucleus | 30.72 | 20.43 |
| Solyc04g082730.1.1 | Tomato | cytosol | 15.69 | 18.6 |
| Solyc01g098790.1.1 | Tomato | cytosol, nucleus, plasma membrane | 35.95 | 11.29 |
Protein Annotations
| EnsemblPlants:Solyc04g082720.2.1 | EnsemblPlantsGene:Solyc04g082720.2 | Gene3D:2.60.40.790 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 | PANTHER:PTHR34661 |
| PANTHER:PTHR34661:SF2 | SUPFAM:SSF49764 | UniParc:UPI000276687A | UniProt:K4BVZ9 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4:-:66300354..66301776
Molecular Weight (calculated)
16717.2 Da
IEP (calculated)
7.344
GRAVY (calculated)
-0.207
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPNESAKSH AKPDIILTGT AKTCPIGPPL GLVDIGSSDN AYIFRVALPG VRHKCNIQFD IQREGRVRIE GVITESEALK NSLKGYEMKV QQLPSPGPFT
101: ISFNLPGPVD PRLCSPQFRT DGILEVIVMK YQIPLVSAEG LPENWYNGSF PAP
101: ISFNLPGPVD PRLCSPQFRT DGILEVIVMK YQIPLVSAEG LPENWYNGSF PAP
001: MNAENNQTTT THSKVISHVF CTGTAKLGSV GPPIGLVDIG VSEVAYIFRV SLPGIEKNQD KIKCEIQREG RVCIQGVIPE IAIPSDTGCL YRMQVQQLCP
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
101: PGPFSITFNL PGQVDPRLFS PNFRSDGIFE VVVVKLGVRI PTS
Arabidopsis Description
AT1G76440 protein [Source:UniProtKB/TrEMBL;Acc:Q9S842]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.