Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073580 | Potato | cytosol, nucleus, plasma membrane | 88.09 | 87.73 |
| VIT_14s0128g00280.t01 | Wine grape | nucleus, plastid | 23.61 | 46.18 |
| KRH33964 | Soybean | cytosol | 35.52 | 43.25 |
| KRG92829 | Soybean | nucleus | 37.58 | 39.1 |
| Solyc04g082740.2.1 | Tomato | cytosol | 15.2 | 37.56 |
| Solyc04g082720.2.1 | Tomato | cytosol, nucleus | 11.29 | 35.95 |
| Solyc01g098810.2.1 | Tomato | cytosol, nucleus | 16.22 | 34.35 |
| Solyc04g082730.1.1 | Tomato | cytosol | 4.31 | 16.28 |
Protein Annotations
| EnsemblPlants:Solyc01g098790.1.1 | EnsemblPlantsGene:Solyc01g098790.1 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | PANTHER:PTHR34661 | PANTHER:PTHR34661:SF3 | PFscan:PS01031 | SEG:seg | SUPFAM:SSF49764 |
| UniParc:UPI000276898F | UniProt:K4B0R6 | MapMan:12.5.3.2.3 | : | : | : |
Description
No Description!
Coordinates
chr1:+:89213645..89215274
Molecular Weight (calculated)
54041.7 Da
IEP (calculated)
4.946
GRAVY (calculated)
-0.356
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNNFTGLVP TDDQFFLLYF IIGTFFGPDI PVEYPKRSVL QRKGLGLPPY SSNQLAGSCL RTIEVERVYY HALRKADRSV VLAQPWLHQY FHGKLPTLYR
101: KQPAAYPRFC DLFPPNLHPH LCCHVYNVIA NIVFIHDPDT SYIEPDSVKR FKKLTGLEHL VMDKDCTKSQ ADVDYEALTN IRNKEISNPG DILQYASLAA
201: SSLPYKEIPS STEPFKDLRL DNEQFDYMSF TSLLKDASDE PFNGVPPDSN GQSDTRPFSG LLNDGSCSNM PPHRNRQFDT TLCRSLLRND AVSQFTDAPP
301: DSSKKSDDTP FSSLFKDVSP LAEESMGPSS KHTNSDDSEL SIVFLPSCPS MEELSNIVGA TKSGFAVAGS AAKGKIGPVL GLLDVGESED AYLFRVSLPG
401: VQRDEREFTC EVEIDGKVLI KGMTTGDRTV HKYSQVFEMQ TQNLCPTGNF TISFKLPGPV DPQAFSGIFG TDGILEGIVL KAETYSQ
101: KQPAAYPRFC DLFPPNLHPH LCCHVYNVIA NIVFIHDPDT SYIEPDSVKR FKKLTGLEHL VMDKDCTKSQ ADVDYEALTN IRNKEISNPG DILQYASLAA
201: SSLPYKEIPS STEPFKDLRL DNEQFDYMSF TSLLKDASDE PFNGVPPDSN GQSDTRPFSG LLNDGSCSNM PPHRNRQFDT TLCRSLLRND AVSQFTDAPP
301: DSSKKSDDTP FSSLFKDVSP LAEESMGPSS KHTNSDDSEL SIVFLPSCPS MEELSNIVGA TKSGFAVAGS AAKGKIGPVL GLLDVGESED AYLFRVSLPG
401: VQRDEREFTC EVEIDGKVLI KGMTTGDRTV HKYSQVFEMQ TQNLCPTGNF TISFKLPGPV DPQAFSGIFG TDGILEGIVL KAETYSQ
001: MSLYSDGLSS DQYFLVNFIM SNYLGPDVYS DNPRCSSSQR LARGLPPYTL MHIGSSSLTV SQLQNLYYNV LRNAKSSLLL HPDMIYMYLK GYLPLEPSGK
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS
Arabidopsis Description
IDM3Increased DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYQ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.