Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073582 | Potato | cytosol | 90.87 | 90.48 |
| VIT_14s0128g00260.t01 | Wine grape | cytosol | 38.7 | 53.29 |
| Bra021325.1-P | Field mustard | cytosol | 39.57 | 47.4 |
| CDY17558 | Canola | cytosol | 39.57 | 47.4 |
| AT1G54850.1 | Thale cress | cytosol | 40.0 | 44.66 |
| CDY43486 | Canola | nucleus | 39.57 | 37.3 |
| VIT_14s0128g00270.t01 | Wine grape | cytosol | 36.09 | 33.07 |
| Solyc04g082740.2.1 | Tomato | cytosol | 28.26 | 32.99 |
| Solyc04g082720.2.1 | Tomato | cytosol, nucleus | 20.43 | 30.72 |
| Solyc01g098790.1.1 | Tomato | cytosol, nucleus, plasma membrane | 34.35 | 16.22 |
| Solyc04g082730.1.1 | Tomato | cytosol | 7.83 | 13.95 |
Protein Annotations
| EnsemblPlants:Solyc01g098810.2.1 | EnsemblPlantsGene:Solyc01g098810.2 | Gene3D:2.60.40.790 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 | PANTHER:PTHR34661 | PANTHER:PTHR34661:SF3 |
| SUPFAM:SSF49764 | UniParc:UPI0002768991 | UniProt:K4B0R8 | MapMan:35.1 | : | : |
Description
Alpha-crystallin domain-containing protein 22.3 [Source:Projected from Arabidopsis thaliana (AT1G54850) UniProtKB/Swiss-Prot;Acc:Q84K79]
Coordinates
chr1:+:89223141..89226906
Molecular Weight (calculated)
24566.0 Da
IEP (calculated)
5.007
GRAVY (calculated)
-0.242
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MESPWRASQT SLPNYGDNNG SAPLHSEPLN VAPISCVPYT GPPLPYGYHS SVSSDINTGS VPVEANSKHM SSQQHAGGQP AMIFYTACPA REEWDNLINC
101: ANGGVALTGS ALLGKVGPLV GSVDIAESED DYVFRVSLPG VTRDERVFRC DVGPNGVIVI KGVSETGENM VRRDNMVFKM QTQNLCPPGE FSVSFQLPGP
201: IDHQNLNCVF GSDGIFEGVV KKRTGPLRGI
101: ANGGVALTGS ALLGKVGPLV GSVDIAESED DYVFRVSLPG VTRDERVFRC DVGPNGVIVI KGVSETGENM VRRDNMVFKM QTQNLCPPGE FSVSFQLPGP
201: IDHQNLNCVF GSDGIFEGVV KKRTGPLRGI
001: MRSSSGLNGM RENNSFPDNT RNPQILEVTP LNSMPYIGPV THASMSSNRM NDSVEKVGGP AMIFLPSDSS SEFSNLISQT KTGVALTGSA AMGKIGLTIG
101: LVDIAESEDS YYFRVALPGV SRDEKEFSCE IEPDGKIMIK GATTTGEQTV CKHNQIFKML TQNLCPPGHF TINFQLPGPV SNEEFNGNFG SDGVLEGVVK
201: KVYYED
101: LVDIAESEDS YYFRVALPGV SRDEKEFSCE IEPDGKIMIK GATTTGEQTV CKHNQIFKML TQNLCPPGHF TINFQLPGPV SNEEFNGNFG SDGVLEGVVK
201: KVYYED
Arabidopsis Description
ACD22.3Alpha-crystallin domain-containing protein 22.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84K79]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.