CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012253.1-P	Field mustard	nucleus	96.74	96.74
CDY31860	Canola	nucleus	76.09	76.59
AT1G20870.1	Thale cress	cytosol	60.65	60.26
CDY29497	Canola	nucleus	23.91	43.14
PGSC0003DMT400025891	Potato	cytosol	17.17	40.1
VIT_18s0122g00750.t01	Wine grape	nucleus	33.91	39.49
CDX87597	Canola	plastid	11.74	39.13
CDX85951	Canola	extracellular	11.74	38.03
Solyc04g082740.2.1	Tomato	cytosol	16.09	37.56
CDX68096	Canola	extracellular	11.52	37.32
KRH44015	Soybean	nucleus	31.96	37.31
CDX88280	Canola	plastid	11.09	36.96
KRH10443	Soybean	nucleus	30.87	36.04
CDY31505	Canola	cytosol	20.65	31.77
CDY17558	Canola	cytosol	13.04	31.25
CDY43484	Canola	cytosol	22.17	31.1
CDY17557	Canola	cytosol	21.52	29.46
CDY43486	Canola	nucleus	14.35	27.05

Protein Annotations

EnsemblPlants:CDY01350	EnsemblPlantsGene:GSBRNA2T00112324001	Gene3D:2.60.40.790	InterPro:HSP20-like_chaperone	InterPro:IPR008978	PANTHER:PTHR34661
PANTHER:PTHR34661:SF1	ProteinID:CDY01350	ProteinID:CDY01350.1	SEG:seg	UniParc:UPI0004EDF28D	MapMan:12.5.3.2.3

Description

BnaA07g11230D

Coordinates

chrLK031926:+:469404..470857

Molecular Weight (calculated)

51269.9 Da

IEP (calculated)

6.415

GRAVY (calculated)

-0.478

Length

460 amino acids

Sequence
(BLAST)

001: MSLCSDGLSS DPYFLVNFIM SHYIGPDVFS DIPRCSASQR LSKRLPPYTP KQIGSSSLTV AQLQNLYYYV LRNASSSLLL HPDMVLMYLK GYLPMEPSGE
101: LHQFTHYFPT SLHPQKRYSP SLEIVKGIVV IDDPALAFIR EGEVQRFRCL SRLDDLRIDR VVSLAPRPVK LLDENRGTEQ ECLSNGEVTS NGLVSDQELQ
201: DTSKRKKVEE AVAVDAVCVN SDHIPEGLSG DIPQRKGTEQ EEAMSNGLVT NQECNSSAEP LETCKRKKDE EEAVSAQASC GVISKTPERF RETYKRRRFK
301: NSSTTATNNK NGETLMERDK TDPPLVIVPP EMKECDEEPT VVTKGTASRG TSIGVVDIGV NNVAYFFQVA LPGVSKENDK FSCEIKSDGK VILEGSTTTG
401: QKTIERHSRV FKMNSRTLWP PGPFKLSFNL PGPVDPRFVS PNFRSDGIFE AVVIRQRDTT

Best Arabidopsis Sequence Match ( AT1G20870.1 )
(BLAST)

001: MSLYSDGLSS DQYFLVNFIM SNYLGPDVYS DNPRCSSSQR LARGLPPYTL MHIGSSSLTV SQLQNLYYNV LRNAKSSLLL HPDMIYMYLK GYLPLEPSGK
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS

Arabidopsis Description

IDM3Increased DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.