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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY17557
CDY43484

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026176.1-P Field mustard cytosol 95.8 89.54
CDY68124 Canola cytosol 94.41 89.4
AT1G14960.1 Thale cress cytosol 78.32 73.2
CDX81683 Canola cytosol 70.63 66.89
CDY66633 Canola cytosol 67.83 64.24
CDY70133 Canola cytosol 67.13 63.58
CDY67068 Canola cytosol 67.13 63.58
CDY68854 Canola cytosol 66.43 62.91
CDY49951 Canola cytosol 66.43 62.91
CDY70188 Canola cytosol 65.73 62.25
CDY66340 Canola cytosol 65.73 62.25
CDY17667 Canola cytosol 64.34 60.93
CDY44127 Canola cytosol 64.34 60.93
CDY54855 Canola cytosol 64.34 60.93
CDY41329 Canola cytosol 62.94 59.6
AT1G30990.1 Thale cress cytosol 59.44 55.92
CDY62739 Canola cytosol 58.04 54.97
CDY10958 Canola cytosol 57.34 54.3
CDY53523 Canola cytosol 37.06 54.08
CDY54858 Canola cytosol 37.76 53.47
CDY41328 Canola cytosol 53.85 50.99
CDY10959 Canola cytosol 51.75 50.34
CDY56716 Canola cytosol 23.78 50.0
CDY35450 Canola cytosol 39.16 47.86
CDY22226 Canola cytosol 39.16 47.46
CDY72258 Canola cytosol 27.97 36.7
VIT_01s0011g05140.t01 Wine grape cytosol 28.67 27.15
KRG89345 Soybean nucleus 24.48 22.88
KRH50391 Soybean cytosol 19.58 22.22
Protein Annotations
EnsemblPlants:CDY68125EnsemblPlantsGene:GSBRNA2T00069927001Gene3D:3.30.530.20GO:A0A078JNS3GO:GO:0006950GO:GO:0006952
GO:GO:0008150GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31338
PANTHER:PTHR31338:SF18PFAM:PF00407ProteinID:CDY68125ProteinID:CDY68125.1SMART:SM01037SUPFAM:SSF55961
UniParc:UPI0004EC1652UniProt:A0A078JNS3MapMan:35.1:::
Description
BnaUnng02730DBnaUnng02730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNS3]
Coordinates
chrLK036880:-:4559..5205
Molecular Weight (calculated)
16793.1 Da
IEP (calculated)
4.585
GRAVY (calculated)
-0.533
Length
143 amino acids
Sequence
(BLAST)
001: MCLKGTAEKH YKRWRSEHNL FPDAIGHHIQ GVTVHDGDWD SHGTIKIWNY TRDGMEEMFK EMIEMDDEKM AVTINGLEGH VMEELKVYVV TFHFIPTSEE
101: GCICKVTMVW GKRNEDSPEP INYMKFVEMM VADMDDYILQ DQE
Best Arabidopsis Sequence Match ( AT1G14960.1 )
(BLAST)
001: MAMSGTYVTD VPLKGSAEKH YKRWRSENHL VPEAIGHLIQ GVTVHDGDWD SHGTIKIWNY TRDGKEEVLK ERIEMDDENM AVTINGLDGH VMEVLKVYVT
101: TLHFIPESKD GCVCKITMVW EKRTEDSPEP IEFMKFVEQM IAHMDDHILQ NQE
Arabidopsis Description
Major latex protein, putative [Source:UniProtKB/TrEMBL;Acc:Q93WB5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.