Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013721.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY44127 | Canola | cytosol | 100.0 | 100.0 |
| AT4G23680.1 | Thale cress | cytosol | 87.42 | 87.42 |
| CDY41328 | Canola | cytosol | 86.75 | 86.75 |
| CDY22226 | Canola | cytosol | 66.89 | 85.59 |
| AT4G23670.1 | Thale cress | cytosol | 81.46 | 81.46 |
| CDY17667 | Canola | cytosol | 79.47 | 79.47 |
| CDY68854 | Canola | cytosol | 78.81 | 78.81 |
| CDY10958 | Canola | cytosol | 76.16 | 76.16 |
| CDY70188 | Canola | cytosol | 76.16 | 76.16 |
| CDY62739 | Canola | cytosol | 76.16 | 76.16 |
| CDY66340 | Canola | cytosol | 76.16 | 76.16 |
| CDY66633 | Canola | cytosol | 76.16 | 76.16 |
| CDY70133 | Canola | cytosol | 75.5 | 75.5 |
| CDY49951 | Canola | cytosol | 75.5 | 75.5 |
| CDY67068 | Canola | cytosol | 75.5 | 75.5 |
| CDY41329 | Canola | cytosol | 73.51 | 73.51 |
| CDY53523 | Canola | cytosol | 46.36 | 71.43 |
| CDY54858 | Canola | cytosol | 47.68 | 71.29 |
| CDY68124 | Canola | cytosol | 69.54 | 69.54 |
| CDY56716 | Canola | cytosol | 31.13 | 69.12 |
| CDY10959 | Canola | cytosol | 66.89 | 68.71 |
| CDX81683 | Canola | cytosol | 67.55 | 67.55 |
| CDY68125 | Canola | cytosol | 60.93 | 64.34 |
| CDY35450 | Canola | cytosol | 44.37 | 57.27 |
| CDY72258 | Canola | cytosol | 32.45 | 44.95 |
| KRG89345 | Soybean | nucleus | 25.83 | 25.49 |
| VIT_01s0011g05140.t01 | Wine grape | cytosol | 25.17 | 25.17 |
| KRH50391 | Soybean | cytosol | 19.87 | 23.81 |
Protein Annotations
| EnsemblPlants:CDY54855 | EnsemblPlantsGene:GSBRNA2T00014765001 | Gene3D:3.30.530.20 | GO:A0A078IXE3 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0009607 | InterPro:Bet_v_I/MLP | InterPro:IPR023393 | InterPro:START-like_dom_sf | PANTHER:PTHR31338 |
| PANTHER:PTHR31338:SF18 | PFAM:PF00407 | ProteinID:CDY44127.1 | ProteinID:CDY54855 | ProteinID:CDY54855.1 | SMART:SM01037 |
| SUPFAM:SSF55961 | UniParc:UPI0002545EC8 | UniProt:A0A078IXE3 | MapMan:35.1 | : | : |
Description
BnaC01g15480DBnaA01g13350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXE3]
Coordinates
chrLK033356:-:31350..32841
Molecular Weight (calculated)
17563.6 Da
IEP (calculated)
6.168
GRAVY (calculated)
-0.793
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGTYVTE VPLKGTAEKH YKRWKSENHV FPDAIGHHIQ NVTVHEGEHD SHGSIRSWNY TWDGKEEMFK EKREVDDENL TLTLRGLEGH VMEQLKVYDV
101: IYQFIPKTED TCACKITIVW EKRNDDSPEP STYMKFVKSL VADMDHHVNK A
101: IYQFIPKTED TCACKITIVW EKRNDDSPEP STYMKFVKSL VADMDHHVNK A
001: MATSGTYVTE VPLKGSAEKY YKRWKNENHV FPDAIGHHIQ NVTVHEGEHD SHGSIRSWNY TWDGKEEVFK ERREIDDETK TLTLRGLEGH VMEQLKVYDV
101: VYQFIPKSED TCIGKITLIW EKRNDDSPEP SGYMKFVKSL VADMGNHVSK T
101: VYQFIPKSED TCIGKITLIW EKRNDDSPEP SGYMKFVKSL VADMGNHVSK T
Arabidopsis Description
AT4g23680/F9D16_150 [Source:UniProtKB/TrEMBL;Acc:Q9SUQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.