Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54855 | Canola | cytosol | 87.42 | 87.42 |
| CDY44127 | Canola | cytosol | 87.42 | 87.42 |
| Bra013721.1-P | Field mustard | cytosol | 87.42 | 87.42 |
| CDY41328 | Canola | cytosol | 80.79 | 80.79 |
| Bra034099.1-P | Field mustard | cytosol | 80.13 | 80.13 |
| AT4G23670.1 | Thale cress | cytosol | 79.47 | 79.47 |
| CDY22226 | Canola | cytosol | 61.59 | 78.81 |
| AT2G01520.1 | Thale cress | cytosol | 77.48 | 77.48 |
| AT2G01530.1 | Thale cress | cytosol | 74.83 | 74.83 |
| AT4G14060.1 | Thale cress | cytosol | 74.83 | 74.83 |
| AT3G26460.1 | Thale cress | cytosol | 70.86 | 70.39 |
| AT1G14940.1 | Thale cress | cytosol | 71.52 | 69.68 |
| AT1G14950.1 | Thale cress | cytosol | 69.54 | 67.74 |
| AT1G14930.1 | Thale cress | cytosol | 69.54 | 67.74 |
| AT3G26450.1 | Thale cress | cytosol | 67.55 | 67.11 |
| AT1G14960.1 | Thale cress | cytosol | 62.91 | 62.09 |
| AT1G30990.1 | Thale cress | cytosol | 53.64 | 53.29 |
| KRG89345 | Soybean | nucleus | 25.83 | 25.49 |
| KRH50391 | Soybean | cytosol | 20.53 | 24.6 |
| VIT_01s0011g05140.t01 | Wine grape | cytosol | 23.84 | 23.84 |
Protein Annotations
| Gene3D:3.30.530.20 | MapMan:35.1 | EntrezGene:828468 | UniProt:A0A178V4S8 | ProteinID:AEE84794.1 | EMBL:AF361838 |
| ArrayExpress:AT4G23680 | EnsemblPlantsGene:AT4G23680 | RefSeq:AT4G23680 | TAIR:AT4G23680 | RefSeq:AT4G23680-TAIR-G | EnsemblPlants:AT4G23680.1 |
| TAIR:AT4G23680.1 | EMBL:AY142055 | InterPro:Bet_v_I/MLP | ProteinID:CAA23034.1 | ProteinID:CAB79323.1 | GO:GO:0005575 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0009607 | InterPro:IPR023393 | RefSeq:NP_194099.1 |
| ProteinID:OAP00866.1 | PFAM:PF00407 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31338 | PANTHER:PTHR31338:SF18 | UniProt:Q9SUQ9 | SMART:SM01037 | SUPFAM:SSF55961 |
| InterPro:START-like_dom_sf | UniParc:UPI00000AACE3 | : | : | : | : |
Description
AT4g23680/F9D16_150 [Source:UniProtKB/TrEMBL;Acc:Q9SUQ9]
Coordinates
chr4:-:12336134..12337599
Molecular Weight (calculated)
17474.5 Da
IEP (calculated)
6.306
GRAVY (calculated)
-0.803
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGTYVTE VPLKGSAEKY YKRWKNENHV FPDAIGHHIQ NVTVHEGEHD SHGSIRSWNY TWDGKEEVFK ERREIDDETK TLTLRGLEGH VMEQLKVYDV
101: VYQFIPKSED TCIGKITLIW EKRNDDSPEP SGYMKFVKSL VADMGNHVSK T
101: VYQFIPKSED TCIGKITLIW EKRNDDSPEP SGYMKFVKSL VADMGNHVSK T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.