Factsheet for Bra034099.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra000941.1-P
Bra002404.1-P
Bra004709.1-P
Bra006620.1-P
Bra008539.1-P
Bra037388.1-P
Bra039379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23670.1	Bra000267.1-P	AT2G42580.1	19000166
AT4G23670.1	Bra004709.1-P	AT2G42580.1	19000166
AT4G23670.1	Bra000941.1-P	AT4G01060.1	21798944
AT4G23670.1	Bra008539.1-P	AT4G01060.1	21798944
AT4G23670.1	Bra037388.1-P	AT4G01060.1	21798944
AT4G23680.1	Bra039379.1-P	AT3G13222.1	21798944
AT4G23680.1	Bra002404.1-P	AT5G22310.1	21798944
AT4G23680.1	Bra006620.1-P	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22226	Canola	cytosol	76.82	98.31
Bra013721.1-P	Field mustard	cytosol	86.09	86.09
AT4G23680.1	Thale cress	cytosol	80.13	80.13
AT4G23670.1	Thale cress	cytosol	74.83	74.83
Bra024879.1-P	Field mustard	cytosol	72.85	72.85
Bra019280.1-P	Field mustard	cytosol	71.52	71.52
Bra010541.1-P	Field mustard	cytosol	70.86	70.86
Bra026653.1-P	Field mustard	cytosol	70.2	70.2
Bra017446.1-P	Field mustard	cytosol	67.55	67.55
Bra034100.1-P	Field mustard	cytosol	67.55	67.55
Bra019278.1-P	Field mustard	cytosol	68.21	65.19
Bra026176.1-P	Field mustard	cytosol	58.94	58.17
Bra026793.1-P	Field mustard	cytosol	58.94	48.37
VIT_01s0011g05140.t01	Wine grape	cytosol	24.5	24.5
KRG89345	Soybean	nucleus	24.5	24.18
KRH50391	Soybean	cytosol	17.88	21.43

Protein Annotations

EnsemblPlants:Bra034099.1	EnsemblPlants:Bra034099.1-P	EnsemblPlantsGene:Bra034099	Gene3D:3.30.530.20	GO:GO:0006950	GO:GO:0006952
GO:GO:0008150	GO:GO:0009607	InterPro:Bet_v_I/MLP	InterPro:IPR023393	InterPro:START-like_dom_sf	PANTHER:PTHR31338
PANTHER:PTHR31338:SF18	PFAM:PF00407	SMART:SM01037	SUPFAM:SSF55961	UniParc:UPI00025441AC	UniProt:M4EZ56
MapMan:35.1	:	:	:	:	:

Description

AT4G23680 (E=1e-071) | major latex protein-related / MLP-related

Coordinates

chrA01:+:27459177..27460374

Molecular Weight (calculated)

17553.7 Da

IEP (calculated)

6.421

GRAVY (calculated)

-0.757

Length

151 amino acids

Sequence
(BLAST)

001: MATSGTYVTE VPLKGAAEKH YKKWKSENHI FPDAIGHHIK NVTVHEGESD SHGSIRSWNY TWDGKEEVFK EKREVDDENL TLVLRELEGH VMEQLKVFDV
101: IYQFIPKTED TSSCKITIIW EKRKDEYPEP STYMKFNKSL IVDMGHHASK A

Best Arabidopsis Sequence Match ( AT4G23680.1 )
(BLAST)

001: MATSGTYVTE VPLKGSAEKY YKRWKNENHV FPDAIGHHIQ NVTVHEGEHD SHGSIRSWNY TWDGKEEVFK ERREIDDETK TLTLRGLEGH VMEQLKVYDV
101: VYQFIPKSED TCIGKITLIW EKRNDDSPEP SGYMKFVKSL VADMGNHVSK T

Arabidopsis Description

AT4g23680/F9D16_150 [Source:UniProtKB/TrEMBL;Acc:Q9SUQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.