Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG95031
KRG95032
KRH03466
KRH22291
KRH25284
KRH27037
KRH30384
KRH54542
KRH56919
KRH63357
KRH66664
KRH66666

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G01530.1 KRG95031 AT3G12390.1 21798944
AT2G01530.1 KRG95032 AT3G12390.1 21798944
AT2G01530.1 KRH66664 AT3G12390.1 21798944
AT2G01530.1 KRH66666 AT3G12390.1 21798944
AT3G26450.1 KRH22291 AT2G42580.1 19000166
AT3G26450.1 KRH27037 AT2G42580.1 19000166
AT4G14060.1 KRH03466 AT3G47620.1 21798944
AT4G14060.1 KRH54542 AT3G47620.1 21798944
AT4G14060.1 KRH56919 AT3G47620.1 21798944
AT4G14060.1 KRH63357 AT3G47620.1 21798944
AT4G23670.1 KRH22291 AT2G42580.1 19000166
AT4G23670.1 KRH27037 AT2G42580.1 19000166
AT4G23680.1 KRH25284 AT5G22310.1 21798944
AT4G23680.1 KRH30384 AT5G22310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH50391 Soybean cytosol 68.63 83.33
VIT_01s0011g05140.t01 Wine grape cytosol 38.56 39.07
Bra034100.1-P Field mustard cytosol 27.45 27.81
CDY41329 Canola cytosol 27.45 27.81
CDY68854 Canola cytosol 26.8 27.15
AT4G14060.1 Thale cress cytosol 26.14 26.49
Bra019280.1-P Field mustard cytosol 26.14 26.49
AT1G14950.1 Thale cress cytosol 26.8 26.45
CDY67068 Canola cytosol 25.49 25.83
CDY66340 Canola cytosol 25.49 25.83
CDY10958 Canola cytosol 25.49 25.83
CDY62739 Canola cytosol 25.49 25.83
CDY54855 Canola cytosol 25.49 25.83
CDY44127 Canola cytosol 25.49 25.83
CDY70133 Canola cytosol 25.49 25.83
CDY17667 Canola cytosol 25.49 25.83
CDY70188 Canola cytosol 25.49 25.83
Bra026653.1-P Field mustard cytosol 25.49 25.83
Bra024879.1-P Field mustard cytosol 25.49 25.83
AT2G01520.1 Thale cress cytosol 25.49 25.83
AT4G23680.1 Thale cress cytosol 25.49 25.83
Bra013721.1-P Field mustard cytosol 25.49 25.83
CDY66633 Canola cytosol 24.84 25.17
Bra010541.1-P Field mustard cytosol 24.84 25.17
AT3G26460.1 Thale cress cytosol 24.84 25.0
AT1G14930.1 Thale cress cytosol 24.84 24.52
AT4G23670.1 Thale cress cytosol 24.18 24.5
CDY49951 Canola cytosol 24.18 24.5
CDY41328 Canola cytosol 24.18 24.5
Bra017446.1-P Field mustard cytosol 24.18 24.5
CDX81683 Canola cytosol 24.18 24.5
AT2G01530.1 Thale cress cytosol 24.18 24.5
Bra034099.1-P Field mustard cytosol 24.18 24.5
CDY68125 Canola cytosol 22.88 24.48
AT3G26450.1 Thale cress cytosol 24.18 24.34
CDY35450 Canola cytosol 18.3 23.93
AT1G14940.1 Thale cress cytosol 24.18 23.87
CDY68124 Canola cytosol 23.53 23.84
CDY54858 Canola cytosol 15.69 23.76
Bra026176.1-P Field mustard cytosol 23.53 23.53
AT1G14960.1 Thale cress cytosol 22.22 22.22
CDY53523 Canola cytosol 13.73 21.43
CDY22226 Canola cytosol 16.34 21.19
Bra019278.1-P Field mustard cytosol 21.57 20.89
CDY10959 Canola cytosol 19.61 20.41
AT1G30990.1 Thale cress cytosol 20.26 20.39
CDY72258 Canola cytosol 14.38 20.18
Bra026793.1-P Field mustard cytosol 22.22 18.48
CDY56716 Canola cytosol 7.84 17.65
Protein Annotations
EMBL:ACUP02012203EMBL:BT090321EnsemblPlants:KRG89345EnsemblPlantsGene:GLYMA_20G017900EntrezGene:100807033Gene3D:3.30.530.20
GO:GO:0006950GO:GO:0006952GO:GO:0008150GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393
InterPro:START-like_dom_sfPANTHER:PTHR31338PFAM:PF00407ProteinID:CAB60268.1ProteinID:KRG89345ProteinID:KRG89345.1
SMART:SM01037SUPFAM:SSF55961UniParc:UPI000009FDCBUniProt:Q9SMF5MapMan:35.1:
Description
hypothetical protein
Coordinates
chr20:+:1834429..1835678
Molecular Weight (calculated)
17722.1 Da
IEP (calculated)
6.748
GRAVY (calculated)
-0.603
Length
153 amino acids
Sequence
(BLAST)
001: MSQPDSLVAE IEVKTSADHF YDTLKGKKQH RIHDVAPHHI HKVEVHEGEW DKSGNIKVLT FADGDTVETL KERVDFDDEN KKITYTILEG VMLKYYKSYK
101: VIVHVLPKGD EHSLVKWTFL YEKVDHTAPE PTKYKDLVVK LTKNVEAHLV EAR
Best Arabidopsis Sequence Match ( AT1G14930.1 )
(BLAST)
001: MAMSGKYVAE VPLKGSAEKH YRRWRSQNNL FPDAIGHHVQ GVTVHDGDWD SHGSIKSWNY TLDGKPEVIK EKREIDDEKM ALTFRGLEGH VMEKYKKYEV
101: ILQFIPKSNE GCVCKVTLIW ENRNEDSPEP INYMKFVKSL VADMDDHILK GQNKA
Arabidopsis Description
Major latex homologue type2 [Source:UniProtKB/TrEMBL;Acc:Q96274]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.