CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26450.1	CDY42827	AT2G42580.1	19000166
AT3G26450.1	CDY51514	AT2G42580.1	19000166
AT3G26450.1	CDY55390	AT2G42580.1	19000166
AT3G26450.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019278.1-P	Field mustard	cytosol	98.64	91.77
CDY10958	Canola	cytosol	73.47	71.52
CDY62739	Canola	cytosol	72.79	70.86
CDY44127	Canola	cytosol	68.71	66.89
CDY54855	Canola	cytosol	68.71	66.89
AT3G26460.1	Thale cress	cytosol	68.03	65.79
CDY49951	Canola	cytosol	66.67	64.9
CDY70188	Canola	cytosol	65.99	64.24
CDY66340	Canola	cytosol	65.99	64.24
CDY41329	Canola	cytosol	65.99	64.24
AT3G26450.1	Thale cress	cytosol	65.99	63.82
CDY22226	Canola	cytosol	51.02	63.56
CDY54858	Canola	cytosol	43.54	63.37
CDY41328	Canola	cytosol	64.63	62.91
CDY66633	Canola	cytosol	63.27	61.59
CDY67068	Canola	cytosol	63.27	61.59
CDY70133	Canola	cytosol	63.27	61.59
CDY17667	Canola	cytosol	62.59	60.93
CDY68854	Canola	cytosol	61.9	60.26
CDY68124	Canola	cytosol	59.18	57.62
CDY53523	Canola	cytosol	38.1	57.14
CDX81683	Canola	cytosol	57.82	56.29
CDY56716	Canola	cytosol	25.17	54.41
CDY35450	Canola	cytosol	42.86	53.85
CDY68125	Canola	cytosol	50.34	51.75
CDY72258	Canola	cytosol	30.61	41.28
KRH50391	Soybean	cytosol	18.37	21.43
KRG89345	Soybean	nucleus	20.41	19.61
VIT_01s0011g05140.t01	Wine grape	cytosol	19.05	18.54

Protein Annotations

EnsemblPlants:CDY10959	EnsemblPlantsGene:GSBRNA2T00048895001	Gene3D:3.30.530.20	GO:A0A078FDD7	GO:GO:0006950	GO:GO:0006952
GO:GO:0008150	GO:GO:0009607	InterPro:Bet_v_I/MLP	InterPro:IPR023393	InterPro:START-like_dom_sf	PANTHER:PTHR31338
PANTHER:PTHR31338:SF18	PFAM:PF00407	ProteinID:CDY10959	ProteinID:CDY10959.1	SMART:SM01037	SUPFAM:SSF55961
UniParc:UPI0004EECAAB	UniProt:A0A078FDD7	MapMan:35.1	:	:	:

Description

BnaA03g46180DBnaA03g46180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDD7]

Coordinates

chrLK032008:-:311537..313379

Molecular Weight (calculated)

17006.5 Da

IEP (calculated)

7.992

GRAVY (calculated)

-0.631

Length

147 amino acids

Sequence
(BLAST)

001: MATSGTYVTE VPLKGTAEKH YKRWKSENFL FPDAIGHHIQ NVTVRRRMGL PRGYVCHGYG HYGSTLYCSN GKQEVFKEKR EIDDENKTMT VRGLEGHVME
101: LFKTEDSCIC KITMVWEKRN DEVPEPSSYM KLLKSMVVDM EDHVLKA

Best Arabidopsis Sequence Match ( AT2G01520.1 )
(BLAST)

001: MATSGTYVTE VPLKGSAEKH YKRWRSENHL FPDAIGHHIQ GVTIHDGEWD SHGAIKIWNY TCDGKPEVFK ERREIDDENM AVTFRGLEGH VMEQLKVYDV
101: IFQFIQKSPD DIICKITMIW EKQNDDMPEP SNYMKFVKSL AADMDDHVLK A

Arabidopsis Description

MLP328MLP-like protein 328 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.