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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY17557
CDY43484

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026176.1-P Field mustard cytosol 100.0 98.69
CDY68125 Canola cytosol 89.4 94.41
AT1G14960.1 Thale cress cytosol 82.78 81.7
CDX81683 Canola cytosol 74.83 74.83
CDY67068 Canola cytosol 72.19 72.19
CDY66633 Canola cytosol 72.19 72.19
CDY70133 Canola cytosol 72.19 72.19
CDY68854 Canola cytosol 71.52 71.52
CDY49951 Canola cytosol 71.52 71.52
CDY70188 Canola cytosol 70.2 70.2
CDY66340 Canola cytosol 70.2 70.2
CDY17667 Canola cytosol 69.54 69.54
CDY44127 Canola cytosol 69.54 69.54
CDY54855 Canola cytosol 69.54 69.54
CDY41329 Canola cytosol 67.55 67.55
CDY54858 Canola cytosol 43.71 65.35
CDY56716 Canola cytosol 29.14 64.71
CDY53523 Canola cytosol 41.72 64.29
AT1G30990.1 Thale cress cytosol 64.24 63.82
CDY62739 Canola cytosol 63.58 63.58
CDY10958 Canola cytosol 62.91 62.91
CDY41328 Canola cytosol 59.6 59.6
CDY10959 Canola cytosol 57.62 59.18
CDY22226 Canola cytosol 45.7 58.47
CDY35450 Canola cytosol 42.38 54.7
CDY72258 Canola cytosol 33.77 46.79
VIT_01s0011g05140.t01 Wine grape cytosol 27.81 27.81
KRG89345 Soybean nucleus 23.84 23.53
KRH50391 Soybean cytosol 18.54 22.22
Protein Annotations
EnsemblPlants:CDY68124EnsemblPlantsGene:GSBRNA2T00069926001Gene3D:3.30.530.20GO:A0A078JMS7GO:GO:0006950GO:GO:0006952
GO:GO:0008150GO:GO:0009607InterPro:Bet_v_I/MLPInterPro:IPR023393InterPro:START-like_dom_sfPANTHER:PTHR31338
PANTHER:PTHR31338:SF18PFAM:PF00407ProteinID:CDY68124ProteinID:CDY68124.1SMART:SM01037SUPFAM:SSF55961
UniParc:UPI0004EE930DUniProt:A0A078JMS7MapMan:35.1:::
Description
BnaUnng02720DBnaUnng02720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMS7]
Coordinates
chrLK036880:-:290..963
Molecular Weight (calculated)
17567.9 Da
IEP (calculated)
4.692
GRAVY (calculated)
-0.509
Length
151 amino acids
Sequence
(BLAST)
001: MAMSGTYVTD VPLKGTAEKH YKRWRSEHNL FPDAIGHHIQ GVTVHDGDWD SHGTIKIWNY TRDGKEEMFK EMIEMDDEKM AVTINGLEGH VMEELKVYVV
101: TFHFIPASEE GCICKVTMVW EKRNEDSPEP INYMKFVEMM VADMDDHILQ D
Best Arabidopsis Sequence Match ( AT1G14960.1 )
(BLAST)
001: MAMSGTYVTD VPLKGSAEKH YKRWRSENHL VPEAIGHLIQ GVTVHDGDWD SHGTIKIWNY TRDGKEEVLK ERIEMDDENM AVTINGLDGH VMEVLKVYVT
101: TLHFIPESKD GCVCKITMVW EKRTEDSPEP IEFMKFVEQM IAHMDDHILQ NQE
Arabidopsis Description
Major latex protein, putative [Source:UniProtKB/TrEMBL;Acc:Q93WB5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.