Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G14960.1 | CDY17557 | AT1G54840.1 | 21798944 |
AT1G14960.1 | CDY43484 | AT1G54840.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra026176.1-P | Field mustard | cytosol | 100.0 | 98.69 |
CDY68125 | Canola | cytosol | 89.4 | 94.41 |
AT1G14960.1 | Thale cress | cytosol | 82.78 | 81.7 |
CDX81683 | Canola | cytosol | 74.83 | 74.83 |
CDY67068 | Canola | cytosol | 72.19 | 72.19 |
CDY66633 | Canola | cytosol | 72.19 | 72.19 |
CDY70133 | Canola | cytosol | 72.19 | 72.19 |
CDY68854 | Canola | cytosol | 71.52 | 71.52 |
CDY49951 | Canola | cytosol | 71.52 | 71.52 |
CDY70188 | Canola | cytosol | 70.2 | 70.2 |
CDY66340 | Canola | cytosol | 70.2 | 70.2 |
CDY17667 | Canola | cytosol | 69.54 | 69.54 |
CDY44127 | Canola | cytosol | 69.54 | 69.54 |
CDY54855 | Canola | cytosol | 69.54 | 69.54 |
CDY41329 | Canola | cytosol | 67.55 | 67.55 |
CDY54858 | Canola | cytosol | 43.71 | 65.35 |
CDY56716 | Canola | cytosol | 29.14 | 64.71 |
CDY53523 | Canola | cytosol | 41.72 | 64.29 |
AT1G30990.1 | Thale cress | cytosol | 64.24 | 63.82 |
CDY62739 | Canola | cytosol | 63.58 | 63.58 |
CDY10958 | Canola | cytosol | 62.91 | 62.91 |
CDY41328 | Canola | cytosol | 59.6 | 59.6 |
CDY10959 | Canola | cytosol | 57.62 | 59.18 |
CDY22226 | Canola | cytosol | 45.7 | 58.47 |
CDY35450 | Canola | cytosol | 42.38 | 54.7 |
CDY72258 | Canola | cytosol | 33.77 | 46.79 |
VIT_01s0011g05140.t01 | Wine grape | cytosol | 27.81 | 27.81 |
KRG89345 | Soybean | nucleus | 23.84 | 23.53 |
KRH50391 | Soybean | cytosol | 18.54 | 22.22 |
Protein Annotations
EnsemblPlants:CDY68124 | EnsemblPlantsGene:GSBRNA2T00069926001 | Gene3D:3.30.530.20 | GO:A0A078JMS7 | GO:GO:0006950 | GO:GO:0006952 |
GO:GO:0008150 | GO:GO:0009607 | InterPro:Bet_v_I/MLP | InterPro:IPR023393 | InterPro:START-like_dom_sf | PANTHER:PTHR31338 |
PANTHER:PTHR31338:SF18 | PFAM:PF00407 | ProteinID:CDY68124 | ProteinID:CDY68124.1 | SMART:SM01037 | SUPFAM:SSF55961 |
UniParc:UPI0004EE930D | UniProt:A0A078JMS7 | MapMan:35.1 | : | : | : |
Description
BnaUnng02720DBnaUnng02720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMS7]
Coordinates
chrLK036880:-:290..963
Molecular Weight (calculated)
17567.9 Da
IEP (calculated)
4.692
GRAVY (calculated)
-0.509
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSGTYVTD VPLKGTAEKH YKRWRSEHNL FPDAIGHHIQ GVTVHDGDWD SHGTIKIWNY TRDGKEEMFK EMIEMDDEKM AVTINGLEGH VMEELKVYVV
101: TFHFIPASEE GCICKVTMVW EKRNEDSPEP INYMKFVEMM VADMDDHILQ D
101: TFHFIPASEE GCICKVTMVW EKRNEDSPEP INYMKFVEMM VADMDDHILQ D
001: MAMSGTYVTD VPLKGSAEKH YKRWRSENHL VPEAIGHLIQ GVTVHDGDWD SHGTIKIWNY TRDGKEEVLK ERIEMDDENM AVTINGLDGH VMEVLKVYVT
101: TLHFIPESKD GCVCKITMVW EKRTEDSPEP IEFMKFVEQM IAHMDDHILQ NQE
101: TLHFIPESKD GCVCKITMVW EKRTEDSPEP IEFMKFVEQM IAHMDDHILQ NQE
Arabidopsis Description
Major latex protein, putative [Source:UniProtKB/TrEMBL;Acc:Q93WB5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.