CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73823
CDY00769
CDY08433
CDY24170
CDY36943
CDY42148
CDY50549
CDY71160

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01530.1	CDX73823	AT3G12390.1	21798944
AT2G01530.1	CDY00769	AT3G12390.1	21798944
AT2G01530.1	CDY08433	AT3G12390.1	21798944
AT2G01530.1	CDY42148	AT3G12390.1	21798944
AT2G01530.1	CDY50549	AT3G12390.1	21798944
AT2G01530.1	CDY71160	AT3G12390.1	21798944
AT4G14060.1	CDY24170	AT3G47620.1	21798944
AT4G14060.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024879.1-P	Field mustard	cytosol	100.0	100.0
CDY68854	Canola	cytosol	95.36	95.36
CDY70133	Canola	cytosol	86.09	86.09
CDY67068	Canola	cytosol	86.09	86.09
AT2G01520.1	Thale cress	cytosol	85.43	85.43
AT2G01530.1	Thale cress	cytosol	83.44	83.44
AT4G14060.1	Thale cress	cytosol	82.78	82.78
CDY49951	Canola	cytosol	82.78	82.78
CDY54855	Canola	cytosol	79.47	79.47
CDY44127	Canola	cytosol	79.47	79.47
CDY66633	Canola	cytosol	78.81	78.81
CDY54858	Canola	cytosol	50.99	76.24
CDY66340	Canola	cytosol	76.16	76.16
CDY70188	Canola	cytosol	75.5	75.5
CDY41328	Canola	cytosol	73.51	73.51
CDX81683	Canola	cytosol	72.19	72.19
CDY62739	Canola	cytosol	72.19	72.19
CDY41329	Canola	cytosol	72.19	72.19
CDY22226	Canola	cytosol	56.29	72.03
CDY10958	Canola	cytosol	71.52	71.52
CDY53523	Canola	cytosol	46.36	71.43
CDY68124	Canola	cytosol	69.54	69.54
CDY68125	Canola	cytosol	60.93	64.34
CDY56716	Canola	cytosol	28.48	63.24
CDY10959	Canola	cytosol	60.93	62.59
CDY35450	Canola	cytosol	47.02	60.68
CDY72258	Canola	cytosol	37.09	51.38
KRG89345	Soybean	nucleus	25.83	25.49
KRH50391	Soybean	cytosol	21.19	25.4
VIT_01s0011g05140.t01	Wine grape	cytosol	24.5	24.5

Protein Annotations

EnsemblPlants:CDY17667	EnsemblPlantsGene:GSBRNA2T00001885001	Gene3D:3.30.530.20	GO:A0A078FY18	GO:GO:0006950	GO:GO:0006952
GO:GO:0008150	GO:GO:0009607	InterPro:Bet_v_I/MLP	InterPro:IPR023393	InterPro:START-like_dom_sf	PANTHER:PTHR31338
PANTHER:PTHR31338:SF18	PFAM:PF00407	ProteinID:CDY17667	ProteinID:CDY17667.1	SMART:SM01037	SUPFAM:SSF55961
UniParc:UPI000253F9A1	UniProt:A0A078FY18	MapMan:35.1	:	:	:

Description

BnaA06g34860DBnaA06g34860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FY18]

Coordinates

chrLK032076:-:483001..483889

Molecular Weight (calculated)

17466.6 Da

IEP (calculated)

6.417

GRAVY (calculated)

-0.680

Length

151 amino acids

Sequence
(BLAST)

001: MATSGTYVTE VPLKGSAEKH YKRWKAENHL FPDAVGHHIQ GVTVHDGEWD SHGSIRAWNY TCDGKQEVFK ERRENDDENM TVTLRGLEGH VMEQLKVYDV
101: SFQFIQKSPS DIVCKITMIW EKRTDDSPEP INYMKFVKSL VADMDHHVIK S

Best Arabidopsis Sequence Match ( AT2G01520.1 )
(BLAST)

001: MATSGTYVTE VPLKGSAEKH YKRWRSENHL FPDAIGHHIQ GVTIHDGEWD SHGAIKIWNY TCDGKPEVFK ERREIDDENM AVTFRGLEGH VMEQLKVYDV
101: IFQFIQKSPD DIICKITMIW EKQNDDMPEP SNYMKFVKSL AADMDDHVLK A

Arabidopsis Description

MLP328MLP-like protein 328 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.