Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G14940.1 | Thale cress | cytosol | 82.58 | 82.58 |
| AT1G14950.1 | Thale cress | cytosol | 77.42 | 77.42 |
| AT2G01520.1 | Thale cress | cytosol | 72.26 | 74.17 |
| CDY53523 | Canola | cytosol | 46.45 | 73.47 |
| AT4G14060.1 | Thale cress | cytosol | 70.32 | 72.19 |
| AT2G01530.1 | Thale cress | cytosol | 68.39 | 70.2 |
| AT4G23680.1 | Thale cress | cytosol | 67.74 | 69.54 |
| AT1G14960.1 | Thale cress | cytosol | 67.1 | 67.97 |
| AT3G26460.1 | Thale cress | cytosol | 62.58 | 63.82 |
| AT4G23670.1 | Thale cress | cytosol | 61.94 | 63.58 |
| AT3G26450.1 | Thale cress | cytosol | 60.0 | 61.18 |
| AT1G30990.1 | Thale cress | cytosol | 57.42 | 58.55 |
| VIT_01s0011g05140.t01 | Wine grape | cytosol | 29.68 | 30.46 |
| KRG89345 | Soybean | nucleus | 24.52 | 24.84 |
| KRH50391 | Soybean | cytosol | 18.06 | 22.22 |
Protein Annotations
| Gene3D:3.30.530.20 | MapMan:35.1 | EntrezGene:838058 | UniProt:A0A178WIY1 | ProteinID:AEE29243.1 | ArrayExpress:AT1G14930 |
| EnsemblPlantsGene:AT1G14930 | RefSeq:AT1G14930 | TAIR:AT1G14930 | RefSeq:AT1G14930-TAIR-G | EnsemblPlants:AT1G14930.1 | TAIR:AT1G14930.1 |
| Unigene:At.26212 | InterPro:Bet_v_I/MLP | ProteinID:CAC83601.1 | EMBL:DQ446251 | GO:GO:0005575 | GO:GO:0006950 |
| GO:GO:0006952 | GO:GO:0008150 | GO:GO:0009607 | InterPro:IPR023393 | RefSeq:NP_172946.1 | ProteinID:OAP17052.1 |
| PFAM:PF00407 | PANTHER:PTHR31338 | PANTHER:PTHR31338:SF18 | UniProt:Q96274 | SMART:SM01037 | SUPFAM:SSF55961 |
| InterPro:START-like_dom_sf | UniParc:UPI00000ACC08 | EMBL:X91914 | : | : | : |
Description
Major latex homologue type2 [Source:UniProtKB/TrEMBL;Acc:Q96274]
Coordinates
chr1:-:5152263..5153104
Molecular Weight (calculated)
17893.3 Da
IEP (calculated)
7.214
GRAVY (calculated)
-0.721
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSGKYVAE VPLKGSAEKH YRRWRSQNNL FPDAIGHHVQ GVTVHDGDWD SHGSIKSWNY TLDGKPEVIK EKREIDDEKM ALTFRGLEGH VMEKYKKYEV
101: ILQFIPKSNE GCVCKVTLIW ENRNEDSPEP INYMKFVKSL VADMDDHILK GQNKA
101: ILQFIPKSNE GCVCKVTLIW ENRNEDSPEP INYMKFVKSL VADMDDHILK GQNKA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.