Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037388.1-P | Field mustard | nucleus | 88.61 | 90.91 |
| CDY48500 | Canola | nucleus | 86.08 | 83.95 |
| CDX74365 | Canola | nucleus | 75.95 | 78.95 |
| CDX91873 | Canola | nucleus | 75.95 | 78.95 |
| AT4G01060.1 | Thale cress | nucleus | 75.95 | 77.92 |
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 75.95 | 77.92 |
| CDY01951 | Canola | nucleus | 75.95 | 77.92 |
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 64.56 | 62.2 |
| CDY52811 | Canola | nucleus | 62.03 | 57.65 |
| CDY27324 | Canola | nucleus | 60.76 | 55.81 |
| CDY66317 | Canola | nucleus | 59.49 | 54.65 |
| CDX95700 | Canola | nucleus | 59.49 | 54.65 |
| CDX83366 | Canola | nucleus | 59.49 | 54.65 |
| CDY42045 | Canola | nucleus | 58.23 | 53.49 |
| CDX80016 | Canola | nucleus | 58.23 | 53.49 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 43.04 | 50.0 |
| CDX89217 | Canola | cytosol | 43.04 | 43.59 |
| CDY60125 | Canola | cytosol | 43.04 | 43.59 |
| CDY60128 | Canola | cytosol | 43.04 | 43.59 |
| CDY24000 | Canola | nucleus | 46.84 | 43.53 |
| CDX84835 | Canola | nucleus | 46.84 | 43.53 |
| CDY58661 | Canola | nucleus | 35.44 | 37.84 |
| CDY38733 | Canola | nucleus | 50.63 | 37.74 |
| CDY47058 | Canola | nucleus | 50.63 | 37.74 |
| CDY19687 | Canola | nucleus | 50.63 | 37.38 |
| CDY19688 | Canola | nucleus | 50.63 | 37.38 |
| CDY27018 | Canola | nucleus | 2.53 | 5.71 |
Protein Annotations
| EnsemblPlants:CDY07170 | EnsemblPlantsGene:GSBRNA2T00123528001 | Gene3D:1.10.10.60 | GO:A0A078EYI8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:SANT/Myb | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 |
| PFAM:PF00249 | ProteinID:CDY07170 | ProteinID:CDY07170.1 | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EBDAA8 |
| MapMan:15.5.2.2 | : | : | : | : | : |
Description
BnaCnng01850D
Coordinates
chrLK031975:+:653320..654030
Molecular Weight (calculated)
9202.0 Da
IEP (calculated)
7.525
GRAVY (calculated)
-0.691
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MDKHLRTKQA KTNPIVASSF SEGTEVSSLE WEAVNMNQEE EDLICRMHKL VGNRWELIAG RIPGRTAEEV ERFWVMKKK
1: MDNHRRTKQP KTNSIVTSSS EGTEVSSLEW EVVNMSQEEE DLVSRMHKLV GDRWELIAGR IPGRTAGEIE RFWVMKN
Arabidopsis Description
ETC3CAPRICE-like MYB3 [Source:TAIR;Acc:AT4G01060]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.