Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53200.1 | CDY08314 | AT1G63650.1 | 12917293 |
| AT5G53200.1 | CDY25513 | AT1G63650.1 | 12917293 |
| AT5G53200.1 | CDY34367 | AT1G63650.1 | 12917293 |
| AT5G53200.1 | CDY72121 | AT1G63650.1 | 12917293 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38733 | Canola | nucleus | 100.0 | 69.81 |
| PGSC0003DMT400000600 | Potato | nucleus | 58.11 | 69.35 |
| CDY47058 | Canola | nucleus | 98.65 | 68.87 |
| AT5G53200.1 | Thale cress | nucleus | 89.19 | 62.26 |
| CDY19688 | Canola | nucleus | 77.03 | 53.27 |
| CDY19687 | Canola | nucleus | 77.03 | 53.27 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 47.3 | 51.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.11 | 50.59 |
| GSMUA_Achr8P19880_001 | Banana | nucleus | 56.76 | 48.84 |
| CDX89217 | Canola | cytosol | 50.0 | 47.44 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 55.41 | 46.59 |
| KRH77639 | Soybean | cytosol | 50.0 | 46.25 |
| CDY60128 | Canola | cytosol | 48.65 | 46.15 |
| CDY60125 | Canola | cytosol | 48.65 | 46.15 |
| CDX84835 | Canola | nucleus | 52.7 | 45.88 |
| Solyc01g095640.1.1 | Tomato | nucleus | 58.11 | 45.74 |
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 54.05 | 45.45 |
| KRH27851 | Soybean | cytosol | 48.65 | 45.0 |
| CDY24000 | Canola | nucleus | 51.35 | 44.71 |
| CDY42045 | Canola | nucleus | 51.35 | 44.19 |
| CDX80016 | Canola | nucleus | 51.35 | 44.19 |
| CDY27324 | Canola | nucleus | 51.35 | 44.19 |
| CDY66317 | Canola | nucleus | 51.35 | 44.19 |
| CDX83366 | Canola | nucleus | 50.0 | 43.02 |
| CDX95700 | Canola | nucleus | 50.0 | 43.02 |
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 41.89 | 37.8 |
| CDY01951 | Canola | nucleus | 39.19 | 37.66 |
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 39.19 | 37.66 |
| CDX74365 | Canola | nucleus | 36.49 | 35.53 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 36.49 | 35.53 |
| CDX91873 | Canola | nucleus | 36.49 | 35.53 |
| CDY07170 | Canola | nucleus | 37.84 | 35.44 |
| CDY48500 | Canola | nucleus | 37.84 | 34.57 |
| CDY52811 | Canola | nucleus | 37.84 | 32.94 |
| EES03290 | Sorghum | nucleus | 33.78 | 32.05 |
| Zm00001d044194_P001 | Maize | nucleus | 33.78 | 32.05 |
| CDY27018 | Canola | nucleus | 2.7 | 5.71 |
Protein Annotations
| EnsemblPlants:CDY58661 | EnsemblPlantsGene:GSBRNA2T00024989001 | Gene3D:1.10.10.60 | GO:A0A078J417 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY58661 | ProteinID:CDY58661.1 |
| SUPFAM:SSF46689 | UniParc:UPI0004EE5EF5 | UniProt:A0A078J417 | MapMan:15.5.2.2 | : | : |
Description
BnaC04g54130DBnaC04g54130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J417]
Coordinates
chrLK033687:+:10555..11181
Molecular Weight (calculated)
9021.7 Da
IEP (calculated)
9.606
GRAVY (calculated)
-1.157
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MTEQEEDLIC RMYRLVGDRW DLIAGRVPGR QPEEIERYWI MRNSDGFAEK RRQLHHSSHK NTKPYRPRFS VYPS
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.