Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27851 | Soybean | cytosol | 95.0 | 95.0 |
| PGSC0003DMT400000600 | Potato | nucleus | 51.25 | 66.13 |
| Bra026297.1-P | Field mustard | cytosol, nucleus, peroxisome | 42.5 | 62.96 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 52.5 | 61.76 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 58.75 | 53.41 |
| GSMUA_Achr8P05730_001 | Banana | cytosol | 60.0 | 52.75 |
| CDX89217 | Canola | cytosol | 51.25 | 52.56 |
| CDY60128 | Canola | cytosol | 51.25 | 52.56 |
| CDY60125 | Canola | cytosol | 51.25 | 52.56 |
| AT2G30432.1 | Thale cress | nucleus | 55.0 | 52.38 |
| Solyc01g095640.1.1 | Tomato | nucleus | 61.25 | 52.13 |
| CDY58661 | Canola | nucleus | 46.25 | 50.0 |
| Bra022637.1-P | Field mustard | nucleus | 46.25 | 49.33 |
| CDX84835 | Canola | nucleus | 51.25 | 48.24 |
| KRH56099 | Soybean | endoplasmic reticulum, nucleus | 37.5 | 47.62 |
| CDY24000 | Canola | nucleus | 50.0 | 47.06 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 42.5 | 44.74 |
| KRH26818 | Soybean | nucleus | 41.25 | 44.0 |
| KRH25406 | Soybean | nucleus | 40.0 | 43.84 |
| CDY47058 | Canola | nucleus | 55.0 | 41.51 |
| CDY38733 | Canola | nucleus | 55.0 | 41.51 |
| KRH22538 | Soybean | nucleus | 38.75 | 41.33 |
| CDY19688 | Canola | nucleus | 55.0 | 41.12 |
| CDY19687 | Canola | nucleus | 55.0 | 41.12 |
| AT2G30420.1 | Thale cress | nucleus | 57.5 | 41.07 |
| AT2G30424.1 | Thale cress | nucleus | 51.25 | 41.0 |
| AT5G53200.1 | Thale cress | nucleus | 53.75 | 40.57 |
| EES03290 | Sorghum | nucleus | 35.0 | 35.9 |
| Zm00001d044194_P001 | Maize | nucleus | 35.0 | 35.9 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100814431 | MapMan:15.5.2.2 | EMBL:ACUP02000681 | UniProt:E4W697 | EMBL:FJ555058 |
| EnsemblPlantsGene:GLYMA_01G224900 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | EnsemblPlants:KRH77639 | ProteinID:KRH77639 |
| ProteinID:KRH77639.1 | PFAM:PF00249 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI00005B0D35 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:55354819..55358040
Molecular Weight (calculated)
9302.0 Da
IEP (calculated)
7.702
GRAVY (calculated)
-0.836
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MSTTATTTSE EVSSNEWKVI HMSEQEEDLI RRMYKLVGDK WNLIAGRIPG RKAEEIERFW IMRHGDAFSV KRNGSKTQDS
1: MFRSDKAEKM DKRRRRQSKA KASCSEEVSS IEWEAVKMSE EEEDLISRMY KLVGDRWELI AGRIPGRTPE EIERYWLMKH GVVFANRRRD FFRK
Arabidopsis Description
CPCTranscription factor CPC [Source:UniProtKB/Swiss-Prot;Acc:O22059]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.