Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G096810.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53200.1 | HORVU2Hr1G096810.5 | AT1G63650.1 | 12917293 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03290 | Sorghum | nucleus | 75.0 | 73.08 |
| Zm00001d044194_P001 | Maize | nucleus | 69.74 | 67.95 |
| PGSC0003DMT400000600 | Potato | nucleus | 39.47 | 48.39 |
| Bra026297.1-P | Field mustard | cytosol, nucleus, peroxisome | 31.58 | 44.44 |
| GSMUA_Achr3P25090_001 | Banana | nucleus | 35.53 | 44.26 |
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 50.0 | 43.18 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 38.16 | 42.65 |
| KRH77639 | Soybean | cytosol | 44.74 | 42.5 |
| KRH27851 | Soybean | cytosol | 43.42 | 41.25 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 46.05 | 39.77 |
| Solyc01g095640.1.1 | Tomato | nucleus | 48.68 | 39.36 |
| CDX84835 | Canola | nucleus | 43.42 | 38.82 |
| CDY24000 | Canola | nucleus | 43.42 | 38.82 |
| CDX89217 | Canola | cytosol | 39.47 | 38.46 |
| CDY60125 | Canola | cytosol | 39.47 | 38.46 |
| CDY60128 | Canola | cytosol | 39.47 | 38.46 |
| AT2G30432.1 | Thale cress | nucleus | 40.79 | 36.9 |
| CDY58661 | Canola | nucleus | 35.53 | 36.49 |
| GSMUA_Achr1P05080_001 | Banana | nucleus | 46.05 | 35.35 |
| Bra022637.1-P | Field mustard | nucleus | 34.21 | 34.67 |
| AT2G30424.1 | Thale cress | nucleus | 43.42 | 33.0 |
| CDY19688 | Canola | nucleus | 46.05 | 32.71 |
| CDY19687 | Canola | nucleus | 46.05 | 32.71 |
| AT5G53200.1 | Thale cress | nucleus | 44.74 | 32.08 |
| CDY47058 | Canola | nucleus | 43.42 | 31.13 |
| CDY38733 | Canola | nucleus | 43.42 | 31.13 |
| AT2G30420.1 | Thale cress | nucleus | 44.74 | 30.36 |
| GSMUA_Achr5P09460_001 | Banana | plastid | 36.84 | 18.18 |
Protein Annotations
| EMBL:AK370851 | EnsemblPlants:HORVU3Hr1G055260.2 | EnsemblPlantsGene:HORVU3Hr1G055260 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 | PFAM:PF00249 | PFscan:PS51294 | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0001CADEF0 | UniProt:F2E3X7 | MapMan:15.5.2.2 | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E3X7]
Coordinates
chrchr3H:-:410089772..410091752
Molecular Weight (calculated)
8876.6 Da
IEP (calculated)
10.028
GRAVY (calculated)
-0.862
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSKSLGKNS KIMSGRERKE VNSNAKHFVD FTEAEEDLVF RMHRLVGNRW ELIAGRIPGR TAEEVEMFWA KKHQDQ
1: MDNHRRTKQP KTNSIVTSSS EGTEVSSLEW EVVNMSQEEE DLVSRMHKLV GDRWELIAGR IPGRTAGEIE RFWVMKN
Arabidopsis Description
ETC3CAPRICE-like MYB3 [Source:TAIR;Acc:AT4G01060]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.