Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P25090_001 | Banana | nucleus | 18.83 | 47.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.97 | 47.06 |
| GSMUA_Achr8P19880_001 | Banana | nucleus | 24.68 | 44.19 |
| GSMUA_Achr10P... | Banana | nucleus | 17.53 | 38.03 |
| GSMUA_Achr1P05080_001 | Banana | nucleus | 24.03 | 37.37 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 18.18 | 36.84 |
| GSMUA_Achr8P05730_001 | Banana | cytosol | 21.43 | 36.26 |
| GSMUA_Achr9P11590_001 | Banana | nucleus | 17.53 | 34.18 |
| EES03290 | Sorghum | nucleus | 16.88 | 33.33 |
| Zm00001d044194_P001 | Maize | nucleus | 16.88 | 33.33 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P09460_001 | EnsemblPlants:GSMUA_Achr5T09460_001 | EnsemblPlantsGene:GSMUA_Achr5G09460_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:SANT/Myb | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000296FA57 | UniProt:M0SX25 | MapMan:15.5.2.2 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G09460_001]
Coordinates
chr5:+:6793304..6794403
Molecular Weight (calculated)
17445.7 Da
IEP (calculated)
11.407
GRAVY (calculated)
-0.380
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALSFLSSA SSWHATSLNP WRSARAVGRK ISTTTMTTTA RKVSFCNSTP HAIAPSSPLF MSVTSLLFSD SFHESLARAE VSSSEWEFID MSDEEVDIIC
101: RMYRLVGDRW EMIAGRVPGR TPEAIERRRR RRRRRRPYTL FGHSPNLLSS PFSS
101: RMYRLVGDRW EMIAGRVPGR TPEAIERRRR RRRRRRPYTL FGHSPNLLSS PFSS
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.