Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P19880_001 | Banana | nucleus | 80.0 | 79.07 |
| GSMUA_Achr3P25090_001 | Banana | nucleus | 48.24 | 67.21 |
| Bra026297.1-P | Field mustard | cytosol, nucleus, peroxisome | 40.0 | 62.96 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 48.24 | 60.29 |
| CDX89217 | Canola | cytosol | 54.12 | 58.97 |
| CDY60128 | Canola | cytosol | 54.12 | 58.97 |
| CDY60125 | Canola | cytosol | 54.12 | 58.97 |
| CDY58661 | Canola | nucleus | 50.59 | 58.11 |
| AT2G30432.1 | Thale cress | nucleus | 56.47 | 57.14 |
| CDX84835 | Canola | nucleus | 56.47 | 56.47 |
| CDY24000 | Canola | nucleus | 56.47 | 56.47 |
| GSMUA_Achr8P05730_001 | Banana | cytosol | 58.82 | 54.95 |
| Bra022637.1-P | Field mustard | nucleus | 48.24 | 54.67 |
| AT5G53200.1 | Thale cress | nucleus | 67.06 | 53.77 |
| CDY38733 | Canola | nucleus | 65.88 | 52.83 |
| CDY19688 | Canola | nucleus | 64.71 | 51.4 |
| CDY19687 | Canola | nucleus | 64.71 | 51.4 |
| CDY47058 | Canola | nucleus | 63.53 | 50.94 |
| AT2G30424.1 | Thale cress | nucleus | 56.47 | 48.0 |
| AT2G30420.1 | Thale cress | nucleus | 62.35 | 47.32 |
| GSMUA_Achr10P... | Banana | nucleus | 38.82 | 46.48 |
| GSMUA_Achr1P05080_001 | Banana | nucleus | 51.76 | 44.44 |
| GSMUA_Achr9P11590_001 | Banana | nucleus | 37.65 | 40.51 |
| GSMUA_Achr5P09460_001 | Banana | plastid | 47.06 | 25.97 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP19730_001 | EnsemblPlants:GSMUA_AchrUn_randomT19730_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG19730_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF620 | PFAM:PF00249 | PFscan:PS50090 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002953DBC | UniProt:M0UAN2 | MapMan:15.5.2.2 | : | : |
Description
Transcription factor TRY [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG19730_001]
Coordinates
chrchrUn_random:-:95354517..95355086
Molecular Weight (calculated)
10349.4 Da
IEP (calculated)
10.047
GRAVY (calculated)
-1.018
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MDSRRKRQRR TSKRCVSEEV SSVAWEFIDM TEQEEDLIYR MYRLVGDRWD LIAGRIPGRK PEEIERFWIM RHGEGFAAKR HGRYS
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.