Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- peroxisome 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026297.1-P | Field mustard | cytosol, nucleus, peroxisome | 69.23 | 100.0 |
| CDY60128 | Canola | cytosol | 98.72 | 98.72 |
| CDY60125 | Canola | cytosol | 98.72 | 98.72 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 69.23 | 79.41 |
| CDY24000 | Canola | nucleus | 62.82 | 57.65 |
| CDX84835 | Canola | nucleus | 61.54 | 56.47 |
| PGSC0003DMT400000600 | Potato | nucleus | 43.59 | 54.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.97 | 54.12 |
| GSMUA_Achr8P19880_001 | Banana | nucleus | 58.97 | 53.49 |
| KRH77639 | Soybean | cytosol | 52.56 | 51.25 |
| KRH27851 | Soybean | cytosol | 51.28 | 50.0 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 56.41 | 50.0 |
| CDY58661 | Canola | nucleus | 47.44 | 50.0 |
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 55.13 | 48.86 |
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 47.44 | 48.05 |
| CDY01951 | Canola | nucleus | 47.44 | 48.05 |
| CDY27324 | Canola | nucleus | 52.56 | 47.67 |
| CDX80016 | Canola | nucleus | 52.56 | 47.67 |
| CDY42045 | Canola | nucleus | 52.56 | 47.67 |
| CDX83366 | Canola | nucleus | 51.28 | 46.51 |
| CDY66317 | Canola | nucleus | 51.28 | 46.51 |
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 48.72 | 46.34 |
| CDY47058 | Canola | nucleus | 62.82 | 46.23 |
| CDY38733 | Canola | nucleus | 62.82 | 46.23 |
| CDX74365 | Canola | nucleus | 44.87 | 46.05 |
| CDX91873 | Canola | nucleus | 44.87 | 46.05 |
| Solyc01g095640.1.1 | Tomato | nucleus | 55.13 | 45.74 |
| CDX95700 | Canola | nucleus | 50.0 | 45.35 |
| CDY19688 | Canola | nucleus | 60.26 | 43.93 |
| CDY19687 | Canola | nucleus | 60.26 | 43.93 |
| CDY07170 | Canola | nucleus | 43.59 | 43.04 |
| CDY52811 | Canola | nucleus | 43.59 | 40.0 |
| EES03290 | Sorghum | nucleus | 39.74 | 39.74 |
| Zm00001d044194_P001 | Maize | nucleus | 39.74 | 39.74 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 38.46 | 39.47 |
| CDY48500 | Canola | nucleus | 38.46 | 37.04 |
| CDY27018 | Canola | nucleus | 7.69 | 17.14 |
Protein Annotations
| EnsemblPlants:CDX89217 | EnsemblPlantsGene:GSBRNA2T00149404001 | Gene3D:1.10.10.60 | GO:A0A078DJX7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:SANT/Myb | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 |
| PFAM:PF00249 | ProteinID:CDX89217 | ProteinID:CDX89217.1 | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE2FE4 |
| MapMan:15.5.2.2 | : | : | : | : | : |
Description
BnaA01g16760D
Coordinates
chrLK031858:+:209429..210867
Molecular Weight (calculated)
9505.5 Da
IEP (calculated)
9.687
GRAVY (calculated)
-0.735
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MDSTYRRQRH NSEEVCSVKW DFIKMSQQEE DLILRMYRLV GDRWEIIAGR VPGRKAVEIE RYWIMRNSTH FLPPSSKF
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.