Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89217 | Canola | cytosol | 17.14 | 7.69 |
| CDY60128 | Canola | cytosol | 17.14 | 7.69 |
| CDY60125 | Canola | cytosol | 17.14 | 7.69 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 11.43 | 5.88 |
| CDX84835 | Canola | nucleus | 11.43 | 4.71 |
| CDY24000 | Canola | nucleus | 11.43 | 4.71 |
| CDX74365 | Canola | nucleus | 8.57 | 3.95 |
| CDX91873 | Canola | nucleus | 8.57 | 3.95 |
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 8.57 | 3.9 |
| CDY01951 | Canola | nucleus | 8.57 | 3.9 |
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 8.57 | 3.66 |
| CDY52811 | Canola | nucleus | 8.57 | 3.53 |
| CDX80016 | Canola | nucleus | 8.57 | 3.49 |
| CDY66317 | Canola | nucleus | 8.57 | 3.49 |
| CDY42045 | Canola | nucleus | 8.57 | 3.49 |
| CDY27324 | Canola | nucleus | 8.57 | 3.49 |
| CDY38733 | Canola | nucleus | 8.57 | 2.83 |
| CDY47058 | Canola | nucleus | 8.57 | 2.83 |
| CDY19688 | Canola | nucleus | 8.57 | 2.8 |
| CDY19687 | Canola | nucleus | 8.57 | 2.8 |
| CDY58661 | Canola | nucleus | 5.71 | 2.7 |
| CDY07170 | Canola | nucleus | 5.71 | 2.53 |
| CDY48500 | Canola | nucleus | 5.71 | 2.47 |
| CDX95700 | Canola | nucleus | 5.71 | 2.33 |
| CDX83366 | Canola | nucleus | 5.71 | 2.33 |
Protein Annotations
| EnsemblPlants:CDY27018 | EnsemblPlantsGene:GSBRNA2T00036829001 | ProteinID:CDY27018 | ProteinID:CDY27018.1 | SEG:seg | UniParc:UPI0004EDCEA2 |
| UniProt:A0A078GQY4 | MapMan:35.2 | : | : | : | : |
Description
BnaA02g10380DBnaA02g10380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQY4]
Coordinates
chrLK032199:-:6627..6734
Molecular Weight (calculated)
4156.9 Da
IEP (calculated)
11.597
GRAVY (calculated)
-1.509
Length
35 amino acids
Sequence
(BLAST)
(BLAST)
1: MRNSDSFAEK RLQLHHSSSH KNNKLHRPRP SIYPS
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.