Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53200.1 | CDY08314 | AT1G63650.1 | 12917293 |
| AT5G53200.1 | CDY25513 | AT1G63650.1 | 12917293 |
| AT5G53200.1 | CDY34367 | AT1G63650.1 | 12917293 |
| AT5G53200.1 | CDY72121 | AT1G63650.1 | 12917293 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58661 | Canola | nucleus | 68.87 | 98.65 |
| CDY38733 | Canola | nucleus | 98.11 | 98.11 |
| AT5G53200.1 | Thale cress | nucleus | 88.68 | 88.68 |
| CDY19688 | Canola | nucleus | 80.19 | 79.44 |
| CDY19687 | Canola | nucleus | 80.19 | 79.44 |
| PGSC0003DMT400000600 | Potato | nucleus | 39.62 | 67.74 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 53.77 | 64.77 |
| GSMUA_Achr8P19880_001 | Banana | nucleus | 51.89 | 63.95 |
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 52.83 | 63.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.94 | 63.53 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 40.57 | 63.24 |
| CDX89217 | Canola | cytosol | 46.23 | 62.82 |
| CDY66317 | Canola | nucleus | 50.0 | 61.63 |
| CDY27324 | Canola | nucleus | 50.0 | 61.63 |
| CDY60128 | Canola | cytosol | 45.28 | 61.54 |
| CDY60125 | Canola | cytosol | 45.28 | 61.54 |
| CDY24000 | Canola | nucleus | 48.11 | 60.0 |
| CDX84835 | Canola | nucleus | 48.11 | 60.0 |
| CDX80016 | Canola | nucleus | 48.11 | 59.3 |
| CDX83366 | Canola | nucleus | 48.11 | 59.3 |
| CDY42045 | Canola | nucleus | 48.11 | 59.3 |
| CDX95700 | Canola | nucleus | 47.17 | 58.14 |
| Solyc01g095640.1.1 | Tomato | nucleus | 50.0 | 56.38 |
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 40.57 | 55.84 |
| CDY01951 | Canola | nucleus | 40.57 | 55.84 |
| KRH77639 | Soybean | cytosol | 41.51 | 55.0 |
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 42.45 | 54.88 |
| KRH27851 | Soybean | cytosol | 40.57 | 53.75 |
| CDY07170 | Canola | nucleus | 37.74 | 50.63 |
| CDX74365 | Canola | nucleus | 35.85 | 50.0 |
| CDX91873 | Canola | nucleus | 35.85 | 50.0 |
| CDY52811 | Canola | nucleus | 38.68 | 48.24 |
| CDY48500 | Canola | nucleus | 34.91 | 45.68 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 31.13 | 43.42 |
| EES03290 | Sorghum | nucleus | 28.3 | 38.46 |
| Zm00001d044194_P001 | Maize | nucleus | 27.36 | 37.18 |
| CDY27018 | Canola | nucleus | 2.83 | 8.57 |
Protein Annotations
| EnsemblPlants:CDY47058 | EnsemblPlantsGene:GSBRNA2T00086671001 | Gene3D:1.10.10.60 | GO:A0A078ICY3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 | PFAM:PF00249 | PFscan:PS50090 | ProteinID:CDY47058 | ProteinID:CDY47058.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EED513 | UniProt:A0A078ICY3 | MapMan:15.5.2.2 | : |
Description
BnaA03g12400DBnaA03g12400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICY3]
Coordinates
chrLK032696:+:1158..2203
Molecular Weight (calculated)
13038.3 Da
IEP (calculated)
9.559
GRAVY (calculated)
-1.291
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNTDRRRRR KQQKVTLHDS EEVSSIEWEF INMTEQEEDL ICRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSDSFA EKRRQLHHSS HKNTKPYRPR
101: FSVYPS
101: FSVYPS
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.