Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g081140.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53200.1 | Solyc08g081140.2.1 | AT1G63650.1 | 12917293 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400000600 | Potato | nucleus | 65.96 | 100.0 |
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 59.57 | 63.64 |
| Bra026297.1-P | Field mustard | cytosol, nucleus, peroxisome | 36.17 | 62.96 |
| KRH77639 | Soybean | cytosol | 52.13 | 61.25 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 56.38 | 60.23 |
| KRH27851 | Soybean | cytosol | 51.06 | 60.0 |
| CDY58661 | Canola | nucleus | 45.74 | 58.11 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 41.49 | 57.35 |
| AT2G30432.1 | Thale cress | nucleus | 50.0 | 55.95 |
| CDX89217 | Canola | cytosol | 45.74 | 55.13 |
| CDY60128 | Canola | cytosol | 44.68 | 53.85 |
| CDY60125 | Canola | cytosol | 44.68 | 53.85 |
| Bra022637.1-P | Field mustard | nucleus | 41.49 | 52.0 |
| CDY38733 | Canola | nucleus | 57.45 | 50.94 |
| CDX84835 | Canola | nucleus | 45.74 | 50.59 |
| GSMUA_Achr8P05730_001 | Banana | cytosol | 48.94 | 50.55 |
| CDY47058 | Canola | nucleus | 56.38 | 50.0 |
| AT5G53200.1 | Thale cress | nucleus | 56.38 | 50.0 |
| CDY19688 | Canola | nucleus | 56.38 | 49.53 |
| CDY19687 | Canola | nucleus | 56.38 | 49.53 |
| CDY24000 | Canola | nucleus | 44.68 | 49.41 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 39.36 | 48.68 |
| AT2G30424.1 | Thale cress | nucleus | 51.06 | 48.0 |
| AT2G30420.1 | Thale cress | nucleus | 53.19 | 44.64 |
| EES03290 | Sorghum | nucleus | 36.17 | 43.59 |
| Zm00001d044194_P001 | Maize | nucleus | 35.11 | 42.31 |
| Solyc07g052490.2.1 | Tomato | nucleus | 28.72 | 32.14 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017877 |
| UniProt:K4AZV3 | EMBL:MF197521 | InterPro:Myb-like_dom | PFAM:PF00249 | PFscan:PS50090 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF620 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc01g095640.1 | EnsemblPlants:Solyc01g095640.1.1 |
| UniParc:UPI0002769121 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:86855787..86856631
Molecular Weight (calculated)
11458.9 Da
IEP (calculated)
9.379
GRAVY (calculated)
-0.981
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MDQNLHHRHK LMHHRCCSHE EEVNSMEWEF IRMSKQEEDL IYRMHKLVGD RWGLIAGRIP GRTAEEIERF WIMRHSDGFA HKRRQTIKKS LPPT
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.