Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0025g03450.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53200.1 | VIT_02s0025g03450.t01 | AT1G63650.1 | 12917293 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 71.59 | 71.59 |
| Bra026297.1-P | Field mustard | cytosol, nucleus, peroxisome | 39.77 | 64.81 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 48.86 | 63.24 |
| PGSC0003DMT400000600 | Potato | nucleus | 44.32 | 62.9 |
| KRH77639 | Soybean | cytosol | 53.41 | 58.75 |
| KRH27851 | Soybean | cytosol | 52.27 | 57.5 |
| CDY60128 | Canola | cytosol | 50.0 | 56.41 |
| CDX89217 | Canola | cytosol | 50.0 | 56.41 |
| CDY60125 | Canola | cytosol | 50.0 | 56.41 |
| Solyc01g095640.1.1 | Tomato | nucleus | 60.23 | 56.38 |
| AT2G30432.1 | Thale cress | nucleus | 53.41 | 55.95 |
| AT5G53200.1 | Thale cress | nucleus | 67.05 | 55.66 |
| CDY58661 | Canola | nucleus | 46.59 | 55.41 |
| CDY38733 | Canola | nucleus | 65.91 | 54.72 |
| CDY47058 | Canola | nucleus | 64.77 | 53.77 |
| CDY19688 | Canola | nucleus | 64.77 | 53.27 |
| CDY19687 | Canola | nucleus | 64.77 | 53.27 |
| CDY24000 | Canola | nucleus | 51.14 | 52.94 |
| CDX84835 | Canola | nucleus | 51.14 | 52.94 |
| Bra022637.1-P | Field mustard | nucleus | 44.32 | 52.0 |
| GSMUA_Achr8P05730_001 | Banana | cytosol | 52.27 | 50.55 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 39.77 | 46.05 |
| VIT_12s0059g02360.t01 | Wine grape | nucleus | 37.5 | 45.21 |
| AT2G30424.1 | Thale cress | nucleus | 50.0 | 44.0 |
| AT2G30420.1 | Thale cress | nucleus | 55.68 | 43.75 |
| VIT_10s0116g00500.t01 | Wine grape | nucleus | 35.23 | 41.33 |
| EES03290 | Sorghum | nucleus | 36.36 | 41.03 |
| Zm00001d044194_P001 | Maize | nucleus | 35.23 | 39.74 |
| VIT_10s0116g01760.t01 | Wine grape | nucleus | 35.23 | 36.05 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100233044 | wikigene:100233044 | MapMan:15.5.2.2 | UniProt:A8VPW6 | ProteinID:ABW34395 |
| ProteinID:ABW34395.1 | ProteinID:CBI22545 | ProteinID:CBI22545.3 | EMBL:EU181427 | EMBL:FN595243 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | PFAM:PF00249 | PFscan:PS50090 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF620 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGR:TC64968 |
| EntrezGene:TRY | wikigene:TRY | UniParc:UPI00015E4D26 | ArrayExpress:VIT_16s0050g02530 | EnsemblPlantsGene:VIT_16s0050g02530 | EnsemblPlants:VIT_16s0050g02530.t01 |
| unigene:Vvi.9731 | RefSeq:XP_002268795 | RefSeq:XP_002268795.1 | : | : | : |
Description
Myb-related TRIPTYCHON-like protein [Source:UniProtKB/TrEMBL;Acc:A8VPW6]
Coordinates
chr16:-:19492845..19495930
Molecular Weight (calculated)
10671.8 Da
IEP (calculated)
9.956
GRAVY (calculated)
-1.141
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MDRRRRKLPK IAAPSQSEEV SSIEWEFINM SEQEEDLIYR MYRLVGDRWD LIAGRIPGRK PEEIERFWIM RNRQGYAERG KEASQKKQ
001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS
101: FSIYPS
Arabidopsis Description
TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.