Factsheet for VIT_15s0046g01130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53200.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0050g02530.t01	Wine grape	nucleus	71.59	71.59
PGSC0003DMT400000600	Potato	nucleus	47.73	67.74
Bra026297.1-P	Field mustard	cytosol, nucleus, peroxisome	38.64	62.96
CDY14264	Canola	cytosol, extracellular, nucleus	46.59	60.29
Solyc01g095640.1.1	Tomato	nucleus	63.64	59.57
AT2G30432.1	Thale cress	nucleus	54.55	57.14
CDX89217	Canola	cytosol	48.86	55.13
CDY60128	Canola	cytosol	48.86	55.13
CDY60125	Canola	cytosol	48.86	55.13
AT5G53200.1	Thale cress	nucleus	65.91	54.72
CDY24000	Canola	nucleus	52.27	54.12
CDX84835	Canola	nucleus	52.27	54.12
CDY58661	Canola	nucleus	45.45	54.05
CDY38733	Canola	nucleus	64.77	53.77
CDY47058	Canola	nucleus	63.64	52.83
GSMUA_Achr8P05730_001	Banana	cytosol	54.55	52.75
CDY19688	Canola	nucleus	63.64	52.34
CDY19687	Canola	nucleus	63.64	52.34
Bra022637.1-P	Field mustard	nucleus	43.18	50.67
HORVU3Hr1G055260.2	Barley	nucleus	43.18	50.0
AT2G30420.1	Thale cress	nucleus	60.23	47.32
EES03290	Sorghum	nucleus	40.91	46.15
AT2G30424.1	Thale cress	nucleus	50.0	44.0
VIT_10s0116g00500.t01	Wine grape	nucleus	37.5	44.0
VIT_12s0059g02360.t01	Wine grape	nucleus	36.36	43.84
Zm00001d044194_P001	Maize	nucleus	38.64	43.59
VIT_10s0116g01760.t01	Wine grape	nucleus	32.95	33.72

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100258469	wikigene:100258469	MapMan:15.5.2.2	UniProt:A5CBT5	EMBL:AM489324
ProteinID:CAN77791	ProteinID:CAN77791.1	ProteinID:CBI40494	ProteinID:CBI40494.3	EMBL:FN596755	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017877	EntrezGene:LOC100258469	wikigene:LOC100258469	InterPro:Myb-like_dom
PFAM:PF00249	PFscan:PS50090	PANTHER:PTHR10641	PANTHER:PTHR10641:SF620	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0001522551	ArrayExpress:VIT_15s0046g01130	EnsemblPlantsGene:VIT_15s0046g01130	EnsemblPlants:VIT_15s0046g01130.t01	unigene:Vvi.20791
RefSeq:XP_002281055	RefSeq:XP_002281055.1	RefSeq:XP_010661898.1	:	:	:

Description

No Description!

Coordinates

chr15:+:18177439..18178248

Molecular Weight (calculated)

10627.9 Da

IEP (calculated)

9.942

GRAVY (calculated)

-0.784

Length

88 amino acids

Sequence
(BLAST)

1: MDRRRRKQAK THSSCCSEEV SSIAWEFINM TEQEEDLIYR MYKLVGDRWA LIAGRIPGRK AEEIERFWIM RHGEGFAGIR KELKRYKF

Best Arabidopsis Sequence Match ( AT5G53200.1 )
(BLAST)

001: MDNTDRRRRR KQHKIALHDS EEVSSIEWEF INMTEQEEDL IFRMYRLVGD RWDLIAGRVP GRQPEEIERY WIMRNSEGFA DKRRQLHSSS HKHTKPHRPR
101: FSIYPS

Arabidopsis Description

TRYTRY [Source:UniProtKB/TrEMBL;Acc:A0A178UFU9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.