Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84835 | Canola | nucleus | 75.0 | 74.12 |
| CDY24000 | Canola | nucleus | 73.81 | 72.94 |
| AT2G30424.1 | Thale cress | nucleus | 80.95 | 68.0 |
| Bra026297.1-P | Field mustard | cytosol, nucleus, peroxisome | 41.67 | 64.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 57.14 | 56.47 |
| KRH77639 | Soybean | cytosol | 52.38 | 55.0 |
| PGSC0003DMT400000600 | Potato | nucleus | 40.48 | 54.84 |
| VIT_15s0046g01130.t01 | Wine grape | nucleus | 57.14 | 54.55 |
| KRH27851 | Soybean | cytosol | 51.19 | 53.75 |
| AT2G30420.1 | Thale cress | nucleus | 71.43 | 53.57 |
| GSMUA_Achr8P19880_001 | Banana | nucleus | 54.76 | 53.49 |
| VIT_16s0050g02530.t01 | Wine grape | nucleus | 55.95 | 53.41 |
| Solyc01g095640.1.1 | Tomato | nucleus | 55.95 | 50.0 |
| AT4G01060.1 | Thale cress | nucleus | 45.24 | 49.35 |
| AT1G01380.1 | Thale cress | cytosol, nucleus, plastid | 47.62 | 48.19 |
| AT5G53200.1 | Thale cress | nucleus | 59.52 | 47.17 |
| AT2G46410.1 | Thale cress | nucleus | 48.81 | 43.62 |
| HORVU3Hr1G055260.2 | Barley | nucleus | 36.9 | 40.79 |
| EES03290 | Sorghum | nucleus | 32.14 | 34.62 |
| Zm00001d044194_P001 | Maize | nucleus | 32.14 | 34.62 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | EntrezGene:3768521 | UniProt:A0A178VV20 | ProteinID:ADC36198.1 | ProteinID:ADC36201.1 |
| ProteinID:ADC36202.1 | ProteinID:ADC36203.1 | ProteinID:ADC36204.1 | ProteinID:ADC36205.1 | ProteinID:AEC08388.1 | ArrayExpress:AT2G30432 |
| EnsemblPlantsGene:AT2G30432 | RefSeq:AT2G30432 | TAIR:AT2G30432 | RefSeq:AT2G30432-TAIR-G | EnsemblPlants:AT2G30432.1 | TAIR:AT2G30432.1 |
| UniProt:D3GKW6 | EMBL:DQ108777 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:2000039 | InterPro:Homeobox-like_sf | InterPro:IPR017877 |
| InterPro:Myb-like_dom | RefSeq:NP_001031445.1 | ProteinID:OAP08883.1 | PFAM:PF00249 | PO:PO:0000293 | PFscan:PS50090 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | Symbol:TCL1 |
| EMBL:U93215 | UniParc:UPI00005DC017 | : | : | : | : |
Description
TCL1TCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VV20]
Coordinates
chr2:-:12968565..12970240
Molecular Weight (calculated)
10494.6 Da
IEP (calculated)
9.239
GRAVY (calculated)
-0.944
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MDNTNRLRRL HCHKQPKFTH SSQEVSSMKW EFINMTEQEE DLIFRMYRLV GDRWDLIARR VVGREAKEIE RYWIMRNCDY FSHK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.