Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07170 | Canola | nucleus | 83.95 | 86.08 |
| Bra037388.1-P | Field mustard | nucleus | 77.78 | 81.82 |
| AT4G01060.1 | Thale cress | nucleus | 67.9 | 71.43 |
| CDX74365 | Canola | nucleus | 65.43 | 69.74 |
| CDX91873 | Canola | nucleus | 65.43 | 69.74 |
| CDY01951 | Canola | nucleus | 65.43 | 68.83 |
| CDX97235 | Canola | cytosol, mitochondrion, nucleus | 65.43 | 68.83 |
| CDY38006 | Canola | cytosol, nucleus, peroxisome | 56.79 | 56.1 |
| CDY27324 | Canola | nucleus | 55.56 | 52.33 |
| CDY66317 | Canola | nucleus | 54.32 | 51.16 |
| CDX95700 | Canola | nucleus | 54.32 | 51.16 |
| CDX83366 | Canola | nucleus | 54.32 | 51.16 |
| CDY52811 | Canola | nucleus | 53.09 | 50.59 |
| CDX80016 | Canola | nucleus | 53.09 | 50.0 |
| CDY42045 | Canola | nucleus | 53.09 | 50.0 |
| CDY14264 | Canola | cytosol, extracellular, nucleus | 39.51 | 47.06 |
| CDY24000 | Canola | nucleus | 41.98 | 40.0 |
| CDX84835 | Canola | nucleus | 41.98 | 40.0 |
| CDY60125 | Canola | cytosol | 37.04 | 38.46 |
| CDY60128 | Canola | cytosol | 37.04 | 38.46 |
| CDX89217 | Canola | cytosol | 37.04 | 38.46 |
| CDY58661 | Canola | nucleus | 34.57 | 37.84 |
| CDY38733 | Canola | nucleus | 45.68 | 34.91 |
| CDY47058 | Canola | nucleus | 45.68 | 34.91 |
| CDY19688 | Canola | nucleus | 45.68 | 34.58 |
| CDY19687 | Canola | nucleus | 45.68 | 34.58 |
| CDY27018 | Canola | nucleus | 2.47 | 5.71 |
Protein Annotations
| EnsemblPlants:CDY48500 | EnsemblPlantsGene:GSBRNA2T00091199001 | Gene3D:1.10.10.60 | GO:A0A078ICB3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:SANT/Myb | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF631 |
| PFAM:PF00249 | ProteinID:CDY48500 | ProteinID:CDY48500.1 | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EEBC0E |
| UniProt:A0A078ICB3 | MapMan:15.5.2.2 | : | : | : | : |
Description
BnaA09g00230DBnaA09g00230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICB3]
Coordinates
chrLK032776:+:34924..35381
Molecular Weight (calculated)
9428.5 Da
IEP (calculated)
9.928
GRAVY (calculated)
-0.752
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MDKHLRTKQA KTNPTVASSS TEGKLMKISS LEWEAVNMNQ EEEDLICRMH KLVGNRWELI AGRIPGRTAE EVERFWVMKK K
1: MDNHRRTKQP KTNSIVTSSS EGTEVSSLEW EVVNMSQEEE DLVSRMHKLV GDRWELIAGR IPGRTAGEIE RFWVMKN
Arabidopsis Description
ETC3CAPRICE-like MYB3 [Source:TAIR;Acc:AT4G01060]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.