Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50239 | Canola | plastid | 96.24 | 95.69 |
| AT1G21440.1 | Thale cress | plastid | 90.17 | 92.86 |
| Bra017914.1-P | Field mustard | peroxisome | 79.48 | 86.75 |
| CDX88338 | Canola | plastid | 77.46 | 78.82 |
| CDX87547 | Canola | plastid | 77.17 | 78.53 |
| GSMUA_AchrUn_... | Banana | peroxisome | 59.54 | 72.79 |
| Os12t0189300-01 | Rice | plasma membrane | 53.18 | 56.1 |
| CDY14871 | Canola | plastid | 26.01 | 18.91 |
| CDX83497 | Canola | plastid | 26.01 | 18.83 |
Protein Annotations
| EnsemblPlants:CDY65510 | EnsemblPlantsGene:GSBRNA2T00046736001 | Gene3D:3.20.20.60 | GO:A0A078JG83 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | InterPro:Isocitrate_lyase_ph_CS | InterPro:Pyrv/PenolPyrv_Kinase-like_dom | PANTHER:PTHR42905 | PANTHER:PTHR42905:SF4 |
| PFAM:PF13714 | ProteinID:CDY65510 | ProteinID:CDY65510.1 | ScanProsite:PS00161 | SEG:seg | SUPFAM:SSF51621 |
| UniParc:UPI0004EDACF2 | UniProt:A0A078JG83 | MapMan:50.5.4 | : | : | : |
Description
BnaCnng47390DBnaCnng47390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JG83]
Coordinates
chrLK034820:+:11106..13084
Molecular Weight (calculated)
37535.0 Da
IEP (calculated)
7.563
GRAVY (calculated)
-0.160
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMLMAAKST SLCYSNPSIS SRTKQNPRVV RYAYPTVRMQ SRVHRLIEEQ GAVLVPGVYD ALSAAIVQQT GFSAALISGY ALSASILGKP DFGLITPPEM
101: AAAARSVCSA APGIPILADA GKFGYLTFYA DTGGGNALNV QRTVKDLIAA GAAGCFLEDQ AWPKRCGHMR GKEVIPAEEH AAKIASARDA IGDSDFFLIA
201: RTDARALSAK TGLSDAIDRA NLYMEAGADA SFVEAPRDDD ELKEIGKRTK GYRLCNMLEG GRTPLHTPDE LKEMGFHLIA HPLTSLYAST RALVDVLKIL
301: KEKGTTKDHL EKMITFEEFN RLVNLGEWYE LETKYSNLRN ALGTHN
101: AAAARSVCSA APGIPILADA GKFGYLTFYA DTGGGNALNV QRTVKDLIAA GAAGCFLEDQ AWPKRCGHMR GKEVIPAEEH AAKIASARDA IGDSDFFLIA
201: RTDARALSAK TGLSDAIDRA NLYMEAGADA SFVEAPRDDD ELKEIGKRTK GYRLCNMLEG GRTPLHTPDE LKEMGFHLIA HPLTSLYAST RALVDVLKIL
301: KEKGTTKDHL EKMITFEEFN RLVNLGEWYE LETKYSNLRN ALGTHN
001: MSMLMAAKST SLFSSNPTIS AKIGQNPRGV RSVYPTVRMQ SRVHRLIEEQ GAVLIPGVYD ALSAAIVQQT GFSAALISGY ALSAVTLGKP DFGLITPPEM
101: AATARSVCAA APKIPIIADA DTGGGNALNV QRTVKDLIAA GAAGCFLEDQ AWPKRCGHMR GKEVIPAEEH AAKIASARDA IGDADFFLIA RTDARALSAK
201: TGLSDAIDRA NLYMEAGADA SFVEAPRDDD ELKEIGRRTK GYRLCNMLEG GRTPLHTPDE LKEMGFHLIA HPLTSLYAST RALVDVLKIL KEKGTTKDHL
301: EKMITFEEFN RLVNLDSWYE LETKYSNLRN ALGETK
101: AATARSVCAA APKIPIIADA DTGGGNALNV QRTVKDLIAA GAAGCFLEDQ AWPKRCGHMR GKEVIPAEEH AAKIASARDA IGDADFFLIA RTDARALSAK
201: TGLSDAIDRA NLYMEAGADA SFVEAPRDDD ELKEIGRRTK GYRLCNMLEG GRTPLHTPDE LKEMGFHLIA HPLTSLYAST RALVDVLKIL KEKGTTKDHL
301: EKMITFEEFN RLVNLDSWYE LETKYSNLRN ALGETK
Arabidopsis Description
At1g21440 [Source:UniProtKB/TrEMBL;Acc:Q501F7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.