Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24127 | Canola | cytosol | 32.68 | 39.37 |
| Bra019005.1-P | Field mustard | extracellular | 35.29 | 39.13 |
| CDY65035 | Canola | cytosol | 28.1 | 32.58 |
| AT1G03680.1 | Thale cress | plastid | 26.8 | 22.91 |
| AT4G03520.1 | Thale cress | plastid | 27.45 | 22.58 |
| AT3G15360.1 | Thale cress | plastid | 28.1 | 22.28 |
| AT1G43560.1 | Thale cress | plastid | 22.88 | 20.96 |
| AT1G76760.1 | Thale cress | plastid | 21.57 | 19.19 |
| AT1G50320.1 | Thale cress | plastid | 22.22 | 18.68 |
| AT2G15570.2 | Thale cress | plastid | 20.91 | 18.39 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.2 | EntrezGene:826825 | ProteinID:AEE83102.2 | ArrayExpress:AT4G12170 | EnsemblPlantsGene:AT4G12170 |
| RefSeq:AT4G12170 | TAIR:AT4G12170 | RefSeq:AT4G12170-TAIR-G | EnsemblPlants:AT4G12170.1 | TAIR:AT4G12170.1 | UniProt:F4JQK2 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006662 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0015035 | GO:GO:0016671 | GO:GO:0019725 | GO:GO:0034599 | GO:GO:0045454 | GO:GO:0047134 |
| GO:GO:0055114 | GO:GO:0098869 | InterPro:IPR013766 | RefSeq:NP_192954.2 | PFAM:PF00085 | PANTHER:PTHR10438 |
| PANTHER:PTHR10438:SF360 | SUPFAM:SSF52833 | SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_domain | UniParc:UPI0008494675 | SEG:seg | : | : | : |
Description
Thioredoxin superfamily protein [Source:TAIR;Acc:AT4G12170]
Coordinates
chr4:-:7273857..7274907
Molecular Weight (calculated)
17271.8 Da
IEP (calculated)
4.287
GRAVY (calculated)
0.099
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQIRGLYHL VVTVTCLVCL GFNVSMCSGS DSDPFIKAYV SSSLPSHDGL VQSLSASEWN SLVIQSKVPV IVVFIAKDCA ECGSLMPELE FLDSEYEYML
101: KFYTVDTDEE LELAKDYRIE YHPITIVFKG GEEKERVLGY YPQMLGQLAN KYL
101: KFYTVDTDEE LELAKDYRIE YHPITIVFKG GEEKERVLGY YPQMLGQLAN KYL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.