Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033264.1-P | Field mustard | nucleus | 50.0 | 57.14 |
| CDY15177 | Canola | nucleus | 46.23 | 55.12 |
| CDX90032 | Canola | nucleus | 46.08 | 54.64 |
| AT4G01090.1 | Thale cress | nucleus | 52.26 | 48.6 |
| AT2G46380.1 | Thale cress | nucleus | 29.97 | 25.91 |
| GSMUA_Achr10P... | Banana | nucleus | 28.01 | 24.77 |
| AT3G61670.1 | Thale cress | nucleus | 29.22 | 24.56 |
| GSMUA_Achr10P... | Banana | cytosol | 27.41 | 23.45 |
| GSMUA_Achr7P14150_001 | Banana | nucleus | 26.2 | 22.96 |
| GSMUA_Achr10P... | Banana | nucleus | 26.81 | 22.7 |
| GSMUA_Achr3P25070_001 | Banana | vacuole | 21.99 | 21.1 |
| Zm00001d053382_P002 | Maize | nucleus | 26.05 | 20.97 |
| Os06t0524300-01 | Rice | nucleus | 25.15 | 20.59 |
| Os02t0258300-01 | Rice | nucleus | 26.05 | 20.55 |
| Zm00001d016081_P002 | Maize | nucleus | 26.05 | 20.31 |
| TraesCS7D01G371500.1 | Wheat | nucleus | 25.15 | 20.19 |
| TraesCS7A01G351500.1 | Wheat | nucleus | 25.0 | 20.17 |
| TraesCS7B01G276600.1 | Wheat | nucleus | 25.15 | 20.17 |
| KXG29961 | Sorghum | nucleus | 26.05 | 20.02 |
| Os01t0621300-01 | Rice | nucleus | 24.25 | 19.95 |
| HORVU3Hr1G055550.3 | Barley | nucleus | 23.64 | 19.8 |
| Zm00001d046072_P001 | Maize | cytosol | 23.95 | 19.7 |
| TraesCS3D01G229400.1 | Wheat | nucleus | 23.64 | 19.7 |
| EER88427 | Sorghum | nucleus | 23.49 | 19.6 |
| TraesCS3B01G253700.2 | Wheat | nucleus | 23.19 | 19.35 |
| TraesCS1B01G459600.2 | Wheat | plastid | 22.89 | 19.34 |
| EES03295 | Sorghum | nucleus | 23.19 | 19.3 |
| HORVU0Hr1G021800.1 | Barley | nucleus | 23.64 | 19.26 |
| Os05t0586400-01 | Rice | nucleus | 22.59 | 19.23 |
| Zm00001d044191_P004 | Maize | nucleus | 22.89 | 19.14 |
| TraesCS7B01G247600.1 | Wheat | cytosol | 24.1 | 19.02 |
| KXG22639 | Sorghum | nucleus | 22.59 | 18.94 |
| TraesCS1D01G434200.2 | Wheat | nucleus | 22.29 | 18.93 |
| TraesCS7A01G336000.1 | Wheat | nucleus | 24.25 | 18.87 |
| TraesCS7D01G343700.1 | Wheat | cytosol | 24.1 | 18.85 |
| TraesCS1A01G425200.2 | Wheat | nucleus | 22.14 | 18.68 |
| Zm00001d011373_P002 | Maize | nucleus | 22.74 | 18.62 |
| TraesCS3A01G224200.2 | Wheat | nucleus | 23.04 | 18.35 |
| Zm00001d009716_P001 | Maize | nucleus | 20.78 | 18.06 |
| HORVU7Hr1G082720.10 | Barley | cytosol, nucleus | 22.14 | 17.21 |
| HORVU1Hr1G092980.14 | Barley | plastid | 22.59 | 17.1 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837155 | UniProt:A0A178W949 | ProteinID:AEE27286.1 | ArrayExpress:AT1G01440 | EnsemblPlantsGene:AT1G01440 |
| RefSeq:AT1G01440 | TAIR:AT1G01440 | RefSeq:AT1G01440-TAIR-G | EnsemblPlants:AT1G01440.1 | TAIR:AT1G01440.1 | EMBL:BT010599 |
| GO:GO:0008150 | RefSeq:NP_171651.1 | ProteinID:OAP13592.1 | PFAM:PF11331 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31105 |
| PANTHER:PTHR31105:SF3 | UniProt:Q6NQ63 | UniParc:UPI0000162BE4 | InterPro:Zinc_ribbon_12 | SEG:seg | : |
Description
At1g01440 [Source:UniProtKB/TrEMBL;Acc:Q6NQ63]
Coordinates
chr1:-:159628..162953
Molecular Weight (calculated)
74074.9 Da
IEP (calculated)
6.390
GRAVY (calculated)
-0.844
Length
664 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTSGDVYGA DTGSSRSDED RGFKEDLNES ATSPMRNRLD DSNSRPGSQR FVKSSRKEEE TDSDSSSSKN TTTRNNPIQY TDKQQAELLR KLDSIKDHLL
101: RGGGNNATVV DQPPMGFHAH HGPPPSYYNP YPEPFPYGMY PTASNQPHVP AYRDPYGFPV HRIPQNFYQG PSHYPNQMPP RPPYPQGQYV DIGSDILESQ
201: LQDPRFFPGT PSRYGDVPFS PALHHGEKVG PFSPHGGVHT RWPSEIDSEM GGAFARGYVQ QAVSDTDSRR CHPLAGGAPF IACHSCFELL YVPKKKLLGQ
301: ERQQKMQCGA CSEVITFRVV DKKLVFSSSA LGETTNRVSV EVEDRSSPIP VVDDYPLNDE EPRIHQETKI VHAVSPSDHS NDEDRSSISS EPRKQVVKSV
401: RSRAQGAKVP PPPPPEKSNL LELFEYSNVN RAAITYGMAQ LGYYKQESYT KQDSLKSESV ATETDVSYNE YYTNTEESED SRISKASKEG RRPRNRKQSS
501: EHSFAEVTNN ISSNDQNNEQ LEVWVNGYLI PEDLVISAEK QAGPVQAGKY WYDYRAGFWG VMGNPCLGII PPFIEEFSRP MPDNCGAGNT SVFVNGRELH
601: ERDLELLSSR GLPRGKNRSY IIDIAGRVLD GDSGEELKSL GRLAPTVDKV KHGFGMRVPR SLVS
101: RGGGNNATVV DQPPMGFHAH HGPPPSYYNP YPEPFPYGMY PTASNQPHVP AYRDPYGFPV HRIPQNFYQG PSHYPNQMPP RPPYPQGQYV DIGSDILESQ
201: LQDPRFFPGT PSRYGDVPFS PALHHGEKVG PFSPHGGVHT RWPSEIDSEM GGAFARGYVQ QAVSDTDSRR CHPLAGGAPF IACHSCFELL YVPKKKLLGQ
301: ERQQKMQCGA CSEVITFRVV DKKLVFSSSA LGETTNRVSV EVEDRSSPIP VVDDYPLNDE EPRIHQETKI VHAVSPSDHS NDEDRSSISS EPRKQVVKSV
401: RSRAQGAKVP PPPPPEKSNL LELFEYSNVN RAAITYGMAQ LGYYKQESYT KQDSLKSESV ATETDVSYNE YYTNTEESED SRISKASKEG RRPRNRKQSS
501: EHSFAEVTNN ISSNDQNNEQ LEVWVNGYLI PEDLVISAEK QAGPVQAGKY WYDYRAGFWG VMGNPCLGII PPFIEEFSRP MPDNCGAGNT SVFVNGRELH
601: ERDLELLSSR GLPRGKNRSY IIDIAGRVLD GDSGEELKSL GRLAPTVDKV KHGFGMRVPR SLVS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.