Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18354 | Canola | nucleus | 79.74 | 93.94 |
| AT2G39100.1 | Thale cress | plastid | 66.88 | 70.27 |
| PGSC0003DMT400079098 | Potato | mitochondrion | 38.59 | 44.12 |
| Solyc06g054580.2.1 | Tomato | nucleus | 37.94 | 43.38 |
| VIT_05s0020g01720.t01 | Wine grape | plastid | 41.8 | 38.24 |
Protein Annotations
| EnsemblPlants:CDX93287 | EnsemblPlantsGene:GSBRNA2T00155249001 | Gene3D:3.30.40.10 | GO:A0A078DWI1 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF95 | PFAM:PF13639 |
| PFscan:PS50089 | ProteinID:CDX93287 | ProteinID:CDX93287.1 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI0004EF1CC1 | MapMan:35.2 | : | : | : |
Description
BnaC04g46090D
Coordinates
chrLK031875:-:767642..769065
Molecular Weight (calculated)
35621.7 Da
IEP (calculated)
10.424
GRAVY (calculated)
-0.565
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNPPPPPPP PPSPTPTTSS SRSIEKRNSL PRIGQNFPER AILAALKEQS CPICLENLTH RRAAVIPSCR HGYCLGCIRK WSGVKRSCPL CNARFDSWLV
101: VSDLASTRFR EERLPLLRDR QTVTYHRRNI IPSGRRRTIP RSMDVLESSS SRRSRPLPWR RSFGRPGSVP DHVILERKLR WRASIYDRQL RAVRLHSRSS
201: LLLVNDDHTK ARITERIEPW MRREVQAVLG DPDPSIVVHF ASALFIKRLE RENNGQSGQG GGILVEDQVS SSLGIFLGDK EDIFWHELRC FAESSLTMET
301: YDAVVEYNEV E
101: VSDLASTRFR EERLPLLRDR QTVTYHRRNI IPSGRRRTIP RSMDVLESSS SRRSRPLPWR RSFGRPGSVP DHVILERKLR WRASIYDRQL RAVRLHSRSS
201: LLLVNDDHTK ARITERIEPW MRREVQAVLG DPDPSIVVHF ASALFIKRLE RENNGQSGQG GGILVEDQVS SSLGIFLGDK EDIFWHELRC FAESSLTMET
301: YDAVVEYNEV E
001: MPPLPSSTAP SSSRHLRSPE SIAKFAGRAI FPALQGKSCP ICLENLTERR SAAVITVCKH GYCLACIRKW SSFKRNCPLC NTRFDSWFIV SDFASRKYHK
101: EQLPILRDRE TLTYHRNNPS DRRRIIQRSR DVLENSSSRS RPLPWRRSFG RPGSVPDSVI FQRKLQWRAS IYTKQLRAVR LHSRRLELSL AVNDYTKAKI
201: TERIEPWIRR ELQAVLGDPD PSVIVHFASA LFIKRLEREN NRQTGQTGML VEDEVSSLRK FLSDKVDIFW HELRCFAESI LTMETYDAVV EYNEVE
101: EQLPILRDRE TLTYHRNNPS DRRRIIQRSR DVLENSSSRS RPLPWRRSFG RPGSVPDSVI FQRKLQWRAS IYTKQLRAVR LHSRRLELSL AVNDYTKAKI
201: TERIEPWIRR ELQAVLGDPD PSVIVHFASA LFIKRLEREN NRQTGQTGML VEDEVSSLRK FLSDKVDIFW HELRCFAESI LTMETYDAVV EYNEVE
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ73]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.