Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028416.1-P | Field mustard | nucleus | 85.12 | 96.04 |
| CDY49079 | Canola | nucleus | 91.32 | 83.87 |
| AT5G38600.1 | Thale cress | nucleus | 72.31 | 65.79 |
| CDY12628 | Canola | nucleus | 50.83 | 56.42 |
| CDY46038 | Canola | nucleus | 50.21 | 54.98 |
| KRH18266 | Soybean | nucleus | 42.36 | 39.65 |
| KRG93782 | Soybean | nucleus | 42.36 | 39.5 |
| GSMUA_Achr5P23660_001 | Banana | nucleus | 36.16 | 37.39 |
| Solyc03g045060.2.1 | Tomato | nucleus | 40.08 | 36.6 |
| Os06t0495700-00 | Rice | nucleus | 35.95 | 35.8 |
| EES05262 | Sorghum | nucleus | 36.57 | 34.1 |
| VIT_14s0083g00220.t01 | Wine grape | nucleus | 44.01 | 33.86 |
| PGSC0003DMT400008672 | Potato | nucleus | 12.19 | 33.33 |
| Zm00001d050793_P001 | Maize | nucleus | 35.95 | 32.04 |
| TraesCS4B01G002400.2 | Wheat | nucleus | 35.12 | 30.47 |
| KRG93822 | Soybean | nucleus | 33.47 | 29.89 |
| TraesCS4A01G000900.1 | Wheat | nucleus | 35.12 | 29.11 |
| HORVU4Hr1G000670.1 | Barley | nucleus | 34.92 | 29.04 |
| TraesCS4D01G000900.2 | Wheat | nucleus | 34.5 | 28.94 |
Protein Annotations
| EnsemblPlants:CDX67412 | EnsemblPlantsGene:GSBRNA2T00098502001 | InterPro:PSP_pro-rich | PANTHER:PTHR13316 | PANTHER:PTHR13316:SF0 | PFAM:PF04046 |
| ProteinID:CDX67412 | ProteinID:CDX67412.1 | SEG:seg | SMART:SM00581 | UniParc:UPI0004EECC58 | MapMan:16.8.1.2.3.3 |
Description
BnaA07g14520D
Coordinates
chrLK031787:+:95833..98821
Molecular Weight (calculated)
55774.9 Da
IEP (calculated)
4.813
GRAVY (calculated)
-1.177
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAESMGRDL DLVEENLITV GGEISAEQVV AVDEKLCIHK ETALDVSSDL GVTRPQSVSD QQQPTVHVTF KHLTRASKQK LESLLQQWSE WEAEYTSLAQ
101: DQEQPLESGE ETFFPALRFG LKKTSSVSFW IDNQTGPKPL EEFVLVESST TPLYDRKFSL GSNSAGGPIS LQGGVEIIDD DPPRCFNCSG YSHSLRECPK
201: PFDRAAVNSA RKLQKSKRNQ NAGSRLPSRY YQKAQSGKYD GLKPGTLDAE TRQLLNLGEL DPPPWLNRMR EIGYPPGYLA PEDDHMSGIT IFGDEMEETR
301: EEIESEDGEI LEKTNPPEPQ MKMTVEFPGI NAPLPENADE WLWDAAAAPS HRSSRSNNNR WQQRTSRGHD YRDDDQLGFE PSSYPPRYGS RSDYGYGSKD
401: RRSRSRSPIM ERSLTERSKR DYYSSRDSDF MDRDRNKDRN RGWDRDRDWD RDDRNRDRGD RDRDRDWDRD RDDRDWSYRL SSRR
101: DQEQPLESGE ETFFPALRFG LKKTSSVSFW IDNQTGPKPL EEFVLVESST TPLYDRKFSL GSNSAGGPIS LQGGVEIIDD DPPRCFNCSG YSHSLRECPK
201: PFDRAAVNSA RKLQKSKRNQ NAGSRLPSRY YQKAQSGKYD GLKPGTLDAE TRQLLNLGEL DPPPWLNRMR EIGYPPGYLA PEDDHMSGIT IFGDEMEETR
301: EEIESEDGEI LEKTNPPEPQ MKMTVEFPGI NAPLPENADE WLWDAAAAPS HRSSRSNNNR WQQRTSRGHD YRDDDQLGFE PSSYPPRYGS RSDYGYGSKD
401: RRSRSRSPIM ERSLTERSKR DYYSSRDSDF MDRDRNKDRN RGWDRDRDWD RDDRNRDRGD RDRDRDWDRD RDDRDWSYRL SSRR
001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
Arabidopsis Description
Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.