Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d021137_P002 | |
| Zm00001d047985_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G38600.1 | Zm00001d047985_P002 | AT2G32840.1 | 21798944 |
| AT5G38600.1 | Zm00001d021137_P002 | AT2G43370.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05262 | Sorghum | nucleus | 80.11 | 83.81 |
| Os06t0495700-00 | Rice | nucleus | 65.75 | 73.46 |
| TraesCS4B01G002400.2 | Wheat | nucleus | 54.33 | 52.87 |
| TraesCS4D01G000900.2 | Wheat | nucleus | 55.99 | 52.69 |
| HORVU4Hr1G000670.1 | Barley | nucleus | 53.96 | 50.34 |
| TraesCS4A01G000900.1 | Wheat | nucleus | 53.59 | 49.83 |
| GSMUA_Achr5P23660_001 | Banana | nucleus | 42.17 | 48.93 |
| AT1G67210.1 | Thale cress | nucleus | 32.6 | 43.7 |
| CDY12628 | Canola | nucleus | 34.99 | 43.58 |
| Bra034014.1-P | Field mustard | nucleus | 34.81 | 42.95 |
| CDY46038 | Canola | nucleus | 34.62 | 42.53 |
| KRH18266 | Soybean | nucleus | 36.65 | 38.49 |
| KRG93782 | Soybean | nucleus | 35.36 | 36.99 |
| Solyc03g045060.2.1 | Tomato | nucleus | 35.91 | 36.79 |
| CDX67412 | Canola | nucleus | 32.04 | 35.95 |
| Bra028416.1-P | Field mustard | nucleus | 28.36 | 35.9 |
| AT5G38600.1 | Thale cress | nucleus | 34.99 | 35.71 |
| VIT_01s0011g02770.t01 | Wine grape | nucleus | 25.6 | 35.55 |
| CDY49079 | Canola | nucleus | 33.52 | 34.54 |
| VIT_14s0083g00220.t01 | Wine grape | nucleus | 39.41 | 34.02 |
| PGSC0003DMT400008672 | Potato | nucleus | 10.87 | 33.33 |
| KRG93822 | Soybean | nucleus | 29.47 | 29.52 |
Protein Annotations
| EnsemblPlants:Zm00001d050793_P001 | EnsemblPlants:Zm00001d050793_T001 | EnsemblPlantsGene:Zm00001d050793 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR001878 | InterPro:PSP_pro-rich | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf |
| PANTHER:PTHR13316 | PANTHER:PTHR13316:SF0 | PFAM:PF04046 | PFscan:PS50158 | ProteinID:AQK53059.1 | SEG:seg |
| SMART:SM00581 | SUPFAM:SSF57756 | UniParc:UPI0008426408 | UniProt:A0A1D6Q3B8 | MapMan:16.8.1.2.3.3 | : |
Description
Nucleic acid binding protein
Coordinates
chr4:+:123426631..123433901
Molecular Weight (calculated)
60874.9 Da
IEP (calculated)
5.047
GRAVY (calculated)
-0.933
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDEFISLD APCEADAKDE GGDVQVKAPD VSGMEPLVSD LQPEGKAGAV GSNPKTSAGN LDLEEGQVED MDLADDDVVV GKDQLLDASI QPEISVAAVQ
101: TVIGFEVKLD KGDGTENEII YESNSISIEE SPSRGVKRAR VESKEPSVRV IYSDLTRESK RKLMQLMQQW SEWQARRMHH LEEAVEVTLE SGEETYYPAL
201: HVGSEKSCAV VFIHFVLFSC FSYSDKSFWV DNQARESDTV DDGSVPLYDR EFTLHSTPLG GSSNTERVDK DDSRCFNCGS YSHAMKDCPK PRDNVAISNA
301: RKQHNLKRNQ SNVNRVQNRY YQKTPGKFDD LKAGVLGPET RQCLGIGEND PPPWLHRMRE LGYPPGYLDV VDDEDRPSGI TIFGDGEVKL EYEEGELSEQ
401: GEASPPKKKM TVEFPGINAP IPENGDQWLW GSTPPQSSGR HHSLDSRDFH DRGPPGADHY SPRYHSHDFG PLRPSIGRSH SDRGWRSPPR YDNPPADDGA
501: WTPHSYPSRQ HLGHYSSSSE MSSRHSRDKD RDRHDSRHYH HRR
101: TVIGFEVKLD KGDGTENEII YESNSISIEE SPSRGVKRAR VESKEPSVRV IYSDLTRESK RKLMQLMQQW SEWQARRMHH LEEAVEVTLE SGEETYYPAL
201: HVGSEKSCAV VFIHFVLFSC FSYSDKSFWV DNQARESDTV DDGSVPLYDR EFTLHSTPLG GSSNTERVDK DDSRCFNCGS YSHAMKDCPK PRDNVAISNA
301: RKQHNLKRNQ SNVNRVQNRY YQKTPGKFDD LKAGVLGPET RQCLGIGEND PPPWLHRMRE LGYPPGYLDV VDDEDRPSGI TIFGDGEVKL EYEEGELSEQ
401: GEASPPKKKM TVEFPGINAP IPENGDQWLW GSTPPQSSGR HHSLDSRDFH DRGPPGADHY SPRYHSHDFG PLRPSIGRSH SDRGWRSPPR YDNPPADDGA
501: WTPHSYPSRQ HLGHYSSSSE MSSRHSRDKD RDRHDSRHYH HRR
001: METEDVLDIP ASSNFGSEVK KNSLESGNGS PEANSLVGND ENVKGNLDLD LTEENLRIVG GQESGEILTE QVSDVFNASV ESVAVDEKLG IQKETLVHST
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
101: TLDVSSKAGV KRPRTSYDEQ QPTVHVTYKH LTRASKQKLE SLLQKWSEWE AENTSLAQDQ EQLFESGEET CFPAIRVGLQ KTSSVSFWID NQTGHKPLED
201: FVLVESSTTP LYDRKFAIGL NSADGSRNVE GGLEIIDDDP PRCFNCGGYS HSLRECPRPF DRSAVNSARK LQKSKRNQNS SGPRLPSRYY QKTQTGKYDG
301: LKPGTLDAET RQLLNLGELD PPPWLNRMRE IGYPPGYLAP EDDHLSGITI FGEEVETREE IESEDGEILE KANHPPEPQM KKTVEFPGIN APFPENADEW
401: LWEAAPSHRN SSRSGRWQQQ KTSRGHDYRD DGPLGVEPSS YPPRYGSRYD YGYGSNEYGS RSRSPGIDRS LSERSKRDYS SYDADFRERD RDRDRNRDRD
501: RDRDWDRDRD RDCDRDRDRD DRDWSYRLSS RR
Arabidopsis Description
Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Source:UniProtKB/TrEMBL;Acc:Q93YW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.