Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G064990.1 | |
| HORVU5Hr1G078170.27 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G38600.1 | HORVU4Hr1G064990.1 | AT2G32840.1 | 21798944 |
| AT5G38600.1 | HORVU5Hr1G078170.27 | AT2G43370.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G000900.2 | Wheat | nucleus | 68.04 | 68.63 |
| TraesCS4A01G000900.1 | Wheat | nucleus | 67.01 | 66.78 |
| TraesCS4B01G002400.2 | Wheat | nucleus | 62.89 | 65.59 |
| Os06t0495700-00 | Rice | nucleus | 49.48 | 59.26 |
| EES05262 | Sorghum | nucleus | 50.69 | 56.84 |
| Zm00001d050793_P001 | Maize | nucleus | 50.34 | 53.96 |
| GSMUA_Achr5P23660_001 | Banana | nucleus | 36.08 | 44.87 |
| AT1G67210.1 | Thale cress | nucleus | 28.87 | 41.48 |
| CDY12628 | Canola | nucleus | 29.73 | 39.68 |
| Bra034014.1-P | Field mustard | nucleus | 29.38 | 38.86 |
| CDY46038 | Canola | nucleus | 29.21 | 38.46 |
| KRH18266 | Soybean | nucleus | 31.27 | 35.2 |
| CDX67412 | Canola | nucleus | 29.04 | 34.92 |
| Bra028416.1-P | Field mustard | nucleus | 25.6 | 34.73 |
| AT5G38600.1 | Thale cress | nucleus | 31.62 | 34.59 |
| KRG93782 | Soybean | nucleus | 30.76 | 34.49 |
| VIT_01s0011g02770.t01 | Wine grape | nucleus | 23.02 | 34.27 |
| Solyc03g045060.2.1 | Tomato | nucleus | 30.58 | 33.58 |
| CDY49079 | Canola | nucleus | 30.07 | 33.21 |
| VIT_14s0083g00220.t01 | Wine grape | nucleus | 33.51 | 31.0 |
| PGSC0003DMT400008672 | Potato | nucleus | 8.42 | 27.68 |
| KRG93822 | Soybean | nucleus | 25.09 | 26.94 |
Protein Annotations
| MapMan:16.8.1.2.3.3 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008270 |
| EnsemblPlantsGene:HORVU4Hr1G000670 | EnsemblPlants:HORVU4Hr1G000670.1 | InterPro:IPR001878 | UniProt:M0YT67 | PFAM:PF04046 | PFscan:PS50158 |
| InterPro:PSP_pro-rich | PANTHER:PTHR13316 | PANTHER:PTHR13316:SF0 | SMART:SM00581 | SUPFAM:SSF57756 | UniParc:UPI000296C743 |
| InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:1139723..1146439
Molecular Weight (calculated)
64291.0 Da
IEP (calculated)
4.690
GRAVY (calculated)
-1.103
Length
582 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEFISLGDD STASEPPQPQ DHGPTDKDII DLDQAQADAA DRAAVNLNFN ATLPVPSQQQ PQDTVTTTKA STVIEIIDLE EGQIAFQESS GAQDAAAADN
101: LQPKDQAQAL TANGPEPPPP SQQQPQQDDI IDLEEGQVED MDLSDDVLVT KHGVSAETPK GSDPLVHASK TGSAFIDQSP TRGVKRARTE SAEPSVRVVY
201: NNLTRESKRK LMELMQQWSE WQARKQHALT ESVEEVLDCG EETYYPALHV GSEKSCAVSF WVDSQARENA AADDGAVPLY DREFTLGSTP MGDSSNAEGK
301: KDKDDSRCFN CGSYSHALKD CPKPRDHVAI SNARKQHNLK RNLSNVSNRG QNRYYQKTPG KFDDLKAGVL GSETRECLGL RENDPPPWLH RMRELGYPPG
401: YLDEVEDEDK PSGITIFGGE GEANAEQQQQ HEEGELPEKG EPSPPRKRMT VEFPGINAPV PENGDPWLWG SAPPPPLQSS SSGRHQHPSS DSQRDRGPPP
501: PPGVEQYSSS RYHSYDYGPA TPGAGRRSSS GYDDGGAFTP HSAYSSRQHS GSGSRERERE RERERERERE RHDRHYYSSN RR
101: LQPKDQAQAL TANGPEPPPP SQQQPQQDDI IDLEEGQVED MDLSDDVLVT KHGVSAETPK GSDPLVHASK TGSAFIDQSP TRGVKRARTE SAEPSVRVVY
201: NNLTRESKRK LMELMQQWSE WQARKQHALT ESVEEVLDCG EETYYPALHV GSEKSCAVSF WVDSQARENA AADDGAVPLY DREFTLGSTP MGDSSNAEGK
301: KDKDDSRCFN CGSYSHALKD CPKPRDHVAI SNARKQHNLK RNLSNVSNRG QNRYYQKTPG KFDDLKAGVL GSETRECLGL RENDPPPWLH RMRELGYPPG
401: YLDEVEDEDK PSGITIFGGE GEANAEQQQQ HEEGELPEKG EPSPPRKRMT VEFPGINAPV PENGDPWLWG SAPPPPLQSS SSGRHQHPSS DSQRDRGPPP
501: PPGVEQYSSS RYHSYDYGPA TPGAGRRSSS GYDDGGAFTP HSAYSSRQHS GSGSRERERE RERERERERE RHDRHYYSSN RR
001: MAASSGSGLE AEEGEISIDM EEDMDLTEDD FRNVSGQFSG QASIVEVGDA VDVRVETVKV DVSSKSGVKR ARTISLEQQP SVHVTYKHLT RDSKQKLESL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL
101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN
201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD
301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD
401: HRFGL
Arabidopsis Description
At1g67210 [Source:UniProtKB/TrEMBL;Acc:Q8LD15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.